Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0564
         (796 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22958| Best HMM Match : RasGAP_C (HMM E-Value=0.23)                 29   4.3  
SB_16460| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.3  
SB_9823| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.3  
SB_4485| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   5.7  

>SB_22958| Best HMM Match : RasGAP_C (HMM E-Value=0.23)
          Length = 1178

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 13/29 (44%), Positives = 13/29 (44%)
 Frame = -1

Query: 352 PWTSAMPGAEPSRLPTKLSKHCLRYLPNY 266
           PW        PS  PT  S H   YLPNY
Sbjct: 76  PWYHHPDSGYPSSSPTSKSNHYNGYLPNY 104


>SB_16460| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 312

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 13/29 (44%), Positives = 13/29 (44%)
 Frame = -1

Query: 352 PWTSAMPGAEPSRLPTKLSKHCLRYLPNY 266
           PW        PS  PT  S H   YLPNY
Sbjct: 120 PWYHHPDSGYPSSSPTSKSNHYNGYLPNY 148


>SB_9823| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1329

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
 Frame = +3

Query: 12  RAVVPTRVDSQEVLP---PVITQIIILLV*FLLHDFIPSPWKSVNIC*VRISLEKLVPAC 182
           +A V T   +Q  LP    V    +ILL+ FL H     P+  V+ C  R+   ++VP C
Sbjct: 443 QATVRTERRAQSQLPREYKVARTGLILLLLFLFHWL---PYLVVHSCSTRVDASEVVPVC 499

Query: 183 GIQTPVHCYNAM 218
           G    +  Y+ M
Sbjct: 500 GGIESIAKYHRM 511


>SB_4485| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1769

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 13/29 (44%), Positives = 20/29 (68%)
 Frame = -1

Query: 163  SNEIRTQQMFTDFHGEGIKSCNKNQTSKI 77
            ++EI   ++F + HGEGI+ C  N+ SKI
Sbjct: 1209 ASEIVNNRIFEN-HGEGIRVCYSNELSKI 1236


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,200,086
Number of Sequences: 59808
Number of extensions: 540114
Number of successful extensions: 986
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 915
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 986
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2191792647
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)