Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0564
         (796 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g47800.1 68414.m05318 F-box family protein contains F-box dom...    29   2.7  
At2g42270.1 68415.m05232 U5 small nuclear ribonucleoprotein heli...    28   8.2  

>At1g47800.1 68414.m05318 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 387

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
 Frame = -1

Query: 373 MVSGYRRPWTSAM-PGAEPSRLPTKLSKHCLRYLP-NYRSIM*SS*PK 236
           +VS    PW  A  P  +P R        CLRYLP +Y+S+M    PK
Sbjct: 89  LVSTPLLPWDPAPGPPVKPHRFGLFWRARCLRYLPKHYKSLMEELKPK 136


>At2g42270.1 68415.m05232 U5 small nuclear ribonucleoprotein
           helicase, putative 
          Length = 2172

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = -3

Query: 410 IALLGRRAYGPADGEWLP-SPMDFSNARGRA 321
           + + G + Y P  GEW+  SP+D     GRA
Sbjct: 851 VIIKGTQVYNPERGEWMELSPLDVMQMIGRA 881


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,246,875
Number of Sequences: 28952
Number of extensions: 369884
Number of successful extensions: 662
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 647
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 662
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1794809600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)