Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0563
         (801 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       26   0.40 
L01615-1|AAA30095.1|   69|Tribolium castaneum zinc finger protei...    26   0.40 
EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock prote...    23   2.8  
DQ659249-1|ABG47447.1|  383|Tribolium castaneum chitinase 9 prot...    23   2.8  
EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine hydroxy...    23   3.7  
AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    22   6.5  
AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory recept...    22   6.5  
AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    21   8.7  

>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 25.8 bits (54), Expect = 0.40
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = -1

Query: 735 HACNKPFKCARLDSFTCVS 679
           HA +KPF+C + D +TCV+
Sbjct: 253 HAGSKPFQCNKCD-YTCVN 270


>L01615-1|AAA30095.1|   69|Tribolium castaneum zinc finger protein
           protein.
          Length = 69

 Score = 25.8 bits (54), Expect = 0.40
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = -1

Query: 735 HACNKPFKCARLDSFTCVS 679
           HA +KPF+C + D +TCV+
Sbjct: 11  HAGSKPFQCNKCD-YTCVN 28


>EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock protein
           90 protein.
          Length = 721

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 3/62 (4%)
 Frame = +3

Query: 120 FDMANNRATKSGFAAEAQRKINSKYSEELAHESLEWIRMITGE---PENTSGDMDNFYEV 290
           FD+  N+  K+      +R       EEL  E L +I+ +      P N S +M    ++
Sbjct: 338 FDLFENKKRKNNIKLYVRRVFIMDNCEELIPEYLNFIKGVVDSEDLPLNISREMLQQNKI 397

Query: 291 LK 296
           LK
Sbjct: 398 LK 399


>DQ659249-1|ABG47447.1|  383|Tribolium castaneum chitinase 9
           protein.
          Length = 383

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +3

Query: 522 AGTYGKPSIGPKEAEKNVRNFSE 590
           AGTYG    GP   E  V  ++E
Sbjct: 280 AGTYGGSDAGPYTREMGVIGYNE 302


>EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine
           hydroxylase protein.
          Length = 532

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 7/18 (38%), Positives = 14/18 (77%)
 Frame = -2

Query: 470 LPQVDSLKSFLRRYTQLS 417
           +PQ++ + +FL+R+T  S
Sbjct: 299 IPQLEEMSNFLKRHTGFS 316


>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 8/23 (34%), Positives = 10/23 (43%)
 Frame = +1

Query: 370 WPSSAWRISTLSSKPQDSWVYRR 438
           W   A   S L  +P D W Y +
Sbjct: 220 WAGFADSHSPLYKRPHDQWAYEK 242


>AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory receptor
           candidate 57 protein.
          Length = 387

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +3

Query: 624 LQYGSNKGANQSGINFG 674
           L YG +K  N  G++FG
Sbjct: 263 LVYGMSKSRNIEGVSFG 279


>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -3

Query: 682 LVLPKLIPLWLAPLFEP 632
           L LP++ PL L P+F P
Sbjct: 175 LPLPQVPPLPLPPIFAP 191


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,711
Number of Sequences: 336
Number of extensions: 4606
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21791490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)