Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0563
(801 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_06_0116 - 25719030-25719458,25720138-25720301,25720390-257206... 39 0.005
11_06_0689 - 26294961-26294976,26295271-26295414,26295506-262959... 38 0.009
01_05_0108 + 18183250-18183336,18183451-18183962,18184074-181842... 33 0.26
03_02_0712 - 10600147-10600196,10600257-10600378,10600993-106014... 31 1.1
09_03_0170 - 13035371-13036504 31 1.4
09_03_0169 - 13010909-13012033 31 1.4
03_01_0400 - 3102325-3102519,3103009-3103455,3105063-3105500 29 3.3
05_03_0442 + 14040280-14040371,14040449-14040517,14041217-140413... 29 4.3
02_04_0414 - 22685981-22686178,22686374-22686465,22686580-226866... 29 4.3
05_03_0645 + 16529635-16529794,16530188-16530312,16531100-165311... 29 5.7
08_02_0916 - 22592039-22592196,22592361-22592781 28 7.5
05_03_0427 - 13886814-13887935 28 7.5
03_05_0637 - 26312348-26313004,26313507-26313575,26313799-26314071 28 9.9
03_04_0181 - 18192774-18192970,18193519-18193882 28 9.9
02_05_0540 + 29852109-29852195,29852304-29852477,29852585-298528... 28 9.9
>05_06_0116 -
25719030-25719458,25720138-25720301,25720390-25720643,
25720727-25720782,25721032-25721169,25721315-25721421,
25721502-25721681,25721757-25721852,25721926-25722007,
25722084-25722425,25722666-25722695,25722788-25722880,
25722963-25723040,25723122-25723222,25723833-25724058,
25724647-25724760,25724855-25725009,25725515-25725554
Length = 894
Score = 38.7 bits (86), Expect = 0.005
Identities = 28/101 (27%), Positives = 51/101 (50%), Gaps = 4/101 (3%)
Frame = +3
Query: 213 ESLEWIRMITGE---PENTSGDMDNFYEVLKDGTLLCKLANNIHPNMIKKI-NTSSMAFK 380
E +EW+ + E P ++S D E+L DGT+LC + N + P ++++ + + +
Sbjct: 19 EVIEWLNALLPEYCLPLDSSDD--ELRELLSDGTVLCHIVNALIPGVLEESWGAYASSDQ 76
Query: 381 CMENINAFLEAARQLGVPAQETFQTVDLWERQNLNSVVICL 503
++ FL +G+P F DL E +++ VV CL
Sbjct: 77 HAGHVKKFLAVVADMGLPG---FSVKDL-EEGSMSGVVDCL 113
>11_06_0689 -
26294961-26294976,26295271-26295414,26295506-26295909,
26296112-26296261,26296334-26296497,26296526-26296836,
26296948-26297084,26297276-26297416,26297821-26297867,
26297977-26298072,26298168-26298249,26298332-26298472,
26298607-26298702,26298809-26298877,26298959-26299030,
26299201-26299368,26299577-26299711,26299792-26299958,
26301213-26301369
Length = 898
Score = 37.9 bits (84), Expect = 0.009
Identities = 29/114 (25%), Positives = 51/114 (44%), Gaps = 13/114 (11%)
Frame = +3
Query: 210 HESLEWIR----MITGEPENTSGDMDNFYEVLKDGTLLCKLANNIHPNMIKKI------- 356
+E+ W+R ++ G+ + F L++G +LC N + P + K+
Sbjct: 57 YEAANWLRRVVGVVCGKDLAEEPSEEEFRLGLRNGIVLCNALNKVQPGSVPKVVEAPSDS 116
Query: 357 --NTSSMAFKCMENINAFLEAARQLGVPAQETFQTVDLWERQNLNSVVICLQSL 512
+ A++ EN+ FL + LG+P TF+ DL + VV C+ SL
Sbjct: 117 ADGAALCAYQYFENVRNFLMGLQDLGLP---TFEASDLEKGGKGVRVVDCVLSL 167
>01_05_0108 +
18183250-18183336,18183451-18183962,18184074-18184245,
18184984-18185022,18185117-18185185,18185281-18185397,
18185842-18186056,18187085-18187240,18187328-18187527,
18187927-18188084,18188321-18188417,18188738-18188829,
18189018-18189191
Length = 695
Score = 33.1 bits (72), Expect = 0.26
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Frame = +3
Query: 273 DNFYEVLKDGTLLCKLANNIHPNMI--KKINTSSM--AFKCMENINAFLEAARQLG 428
D+ + + KDG LLCKL N P I + INT + ++ EN L +A+ +G
Sbjct: 187 DHLFHLTKDGVLLCKLINLAVPGTIDERAINTKKLLNLWEKNENHTLCLNSAKAIG 242
>03_02_0712 -
10600147-10600196,10600257-10600378,10600993-10601489,
10601663-10601851,10601936-10602099,10602193-10602446,
10602535-10602691,10602830-10602995,10603121-10603227,
10603305-10603478,10603594-10603689,10603781-10603862,
10603948-10604058,10604253-10604309,10604638-10604709,
10604799-10605041,10605195-10605341,10605381-10605616,
10605745-10605865
Length = 1014
Score = 31.1 bits (67), Expect = 1.1
Identities = 18/65 (27%), Positives = 34/65 (52%)
Frame = +3
Query: 318 LANNIHPNMIKKINTSSMAFKCMENINAFLEAARQLGVPAQETFQTVDLWERQNLNSVVI 497
+ N ++++ + AF+ EN+ FL AA+++G+P F+ DL + VV
Sbjct: 121 VVNTAADSVLQPDGAALSAFQYFENVRNFLVAAQEIGLPC---FEASDLEQGGKSARVVN 177
Query: 498 CLQSL 512
C+ +L
Sbjct: 178 CVLAL 182
Score = 30.3 bits (65), Expect = 1.9
Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 9/71 (12%)
Frame = +3
Query: 168 AQRKINSKYSEELA---HESLEWIRMITGE------PENTSGDMDNFYEVLKDGTLLCKL 320
+ R + S+ +EE A +E+ W+R G PE S + F L++G +LC
Sbjct: 28 SDRDLASRRAEEAAARRNEAAGWLRRTVGAVAARDLPEEPSEE--EFRLGLRNGQILCGA 85
Query: 321 ANNIHPNMIKK 353
N +HP + K
Sbjct: 86 LNRVHPGAVPK 96
>09_03_0170 - 13035371-13036504
Length = 377
Score = 30.7 bits (66), Expect = 1.4
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = -3
Query: 268 SPEVFSGSPVIIRIHSKDSWASSSLYLLLIFLWASAANPDLVAR 137
S VF+GS + +K +W + ++L + W + DLVAR
Sbjct: 278 SQTVFTGSLTTMMKKTKFNWMQNMIFLPRFYQWPETVHVDLVAR 321
>09_03_0169 - 13010909-13012033
Length = 374
Score = 30.7 bits (66), Expect = 1.4
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = -3
Query: 259 VFSGSPVIIRIHSKDSWASSSLYLLLIFLWASAANPDLVAR 137
+F+GS + SK W + ++L + W + DLVAR
Sbjct: 278 IFTGSLTTMMKRSKFKWMQNMIFLPRFYKWPETVHVDLVAR 318
>03_01_0400 - 3102325-3102519,3103009-3103455,3105063-3105500
Length = 359
Score = 29.5 bits (63), Expect = 3.3
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +3
Query: 504 QSLGRKAGTYGK-PSIGPKEAEKNVRNFSEEQLRAGQGVIS 623
+S GRK + P+ G AE +VRN S QLR G+++
Sbjct: 37 ESFGRKGLRFAADPATGAPTAELSVRNGSSLQLRLADGLVT 77
>05_03_0442 +
14040280-14040371,14040449-14040517,14041217-14041329,
14043110-14043209,14044508-14044682,14044768-14044881,
14045157-14045287,14048401-14048464,14048585-14048624,
14049002-14049225,14049634-14049876,14050145-14050313,
14050569-14050873,14051325-14051511,14051622-14051775,
14052145-14052207,14052300-14052396,14052500-14052589
Length = 809
Score = 29.1 bits (62), Expect = 4.3
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = -2
Query: 497 DHDGVEILSLPQVDSLKSFLRRYTQLSCG 411
DH G+EI+ D+ K +L+ Y CG
Sbjct: 146 DHMGMEIIETGNPDAFKQYLQEYENTICG 174
>02_04_0414 -
22685981-22686178,22686374-22686465,22686580-22686676,
22686801-22686916,22687314-22687513,22687588-22687740,
22687960-22688171,22688403-22688519,22688613-22688687,
22688815-22688853,22689518-22689689,22689809-22690056,
22690151-22690324,22690418-22690504
Length = 659
Score = 29.1 bits (62), Expect = 4.3
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Frame = +3
Query: 273 DNFYEVLKDGTLLCKLANNIHPNMI--KKINTSS--MAFKCMENINAFLEAARQLG 428
++ + +++DG LLCKL N P I + INT ++ EN L +A+ +G
Sbjct: 157 NDIFNLVRDGVLLCKLINVAVPGTIDERAINTKKDPNPWERNENHTLCLNSAKAIG 212
>05_03_0645 +
16529635-16529794,16530188-16530312,16531100-16531173,
16531961-16532006,16532638-16532730,16534429-16535886
Length = 651
Score = 28.7 bits (61), Expect = 5.7
Identities = 10/41 (24%), Positives = 21/41 (51%)
Frame = +2
Query: 38 ACLHSVHSDFTFYRVCDLFK*FIKLLLVRHGKQPSHQIRIC 160
A + S+HS T + VC + ++ + V + K+ ++ C
Sbjct: 26 AIIGSMHSSMTLFSVCKILSLYVDMCFVDYSKEVHSYLKYC 66
>08_02_0916 - 22592039-22592196,22592361-22592781
Length = 192
Score = 28.3 bits (60), Expect = 7.5
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +1
Query: 142 PPNQDLQLKPRERSTANTAKSWPTSPW 222
P + + L+ R+R+T+ TA++W PW
Sbjct: 22 PCGRPVVLRSRQRATSLTARNWCRRPW 48
>05_03_0427 - 13886814-13887935
Length = 373
Score = 28.3 bits (60), Expect = 7.5
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = -3
Query: 337 GWMLLASLHRRVPSLSTS*KLSISPEVFSGSPVIIRI 227
GW+ L LHR SL K +SP + V+ RI
Sbjct: 209 GWVWLKLLHRSAASLGVHSKTKLSPRFYGPYQVLGRI 245
>03_05_0637 - 26312348-26313004,26313507-26313575,26313799-26314071
Length = 332
Score = 27.9 bits (59), Expect = 9.9
Identities = 15/33 (45%), Positives = 17/33 (51%)
Frame = -3
Query: 232 RIHSKDSWASSSLYLLLIFLWASAANPDLVARL 134
RIH + W +YLL W SAA DLV L
Sbjct: 67 RIHRQQPW-KHRIYLLWAAEWRSAAKEDLVFAL 98
>03_04_0181 - 18192774-18192970,18193519-18193882
Length = 186
Score = 27.9 bits (59), Expect = 9.9
Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 6/35 (17%)
Frame = +2
Query: 179 DQQQIQRRAGPR------VLGMDSDDHRRTREHLR 265
D+QQ ++ GPR VLG SD H R R H R
Sbjct: 45 DRQQWRQPRGPRCPHSRAVLGSSSDSHHRHRNHPR 79
>02_05_0540 +
29852109-29852195,29852304-29852477,29852585-29852841,
29852954-29853125,29853513-29853551,29853647-29853715,
29853795-29853911,29854190-29854401,29854578-29854736,
29854810-29855009,29855100-29855266,29855346-29855442,
29855560-29855651,29855861-29856139
Length = 706
Score = 27.9 bits (59), Expect = 9.9
Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Frame = +3
Query: 273 DNFYEVLKDGTLLCKLANNIHPNMI--KKINTSSM--AFKCMENINAFLEAARQLG 428
+ +++++DG LLCKL N P I + IN + ++ EN L +A+ +G
Sbjct: 160 NQLFDLVRDGVLLCKLINLAVPGTIDERAINKKRVLNPWERNENHTLCLNSAKAIG 215
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,410,229
Number of Sequences: 37544
Number of extensions: 523292
Number of successful extensions: 1376
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1321
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1375
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2174172540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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