Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0563
         (801 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    23   3.3  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    22   5.8  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   5.8  

>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = -3

Query: 397 LIFSMHLKAIDDVLIFLIMFGWMLL 323
           L+   +++  DDV + L+ FGW ++
Sbjct: 378 LVPFFYVQEDDDVKLVLLNFGWQMI 402


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
 Frame = +3

Query: 234 MITGEPENTSGDMDNFYEVLKDGTLLCKLANNIHPN---MIKKI 356
           ++TG P  T GD    Y ++  G    +   +I  N   +IKK+
Sbjct: 558 LLTGTPPFTGGDPMKTYNIILKGIDAIEFPRSITRNATALIKKL 601


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 11/39 (28%), Positives = 18/39 (46%)
 Frame = +2

Query: 302  HSSVQASQQHPPEHDQKDQHIVDGLQVHGEYQRFPRSRK 418
            HSS +  QQ P +  Q+ Q      Q     Q+ P+ ++
Sbjct: 1495 HSSQKTQQQQPQQQQQQQQQQQPQQQSQQPQQQQPQPQQ 1533


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 234,242
Number of Sequences: 438
Number of extensions: 5056
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25367793
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)