Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0561
         (693 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6C3.06c |||P-type ATPase, calcium transporting|Schizosacchar...    27   2.6  
SPBC25H2.03 |||vacuolar protein involved in phosphoinositide met...    27   3.4  
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    27   3.4  

>SPAC6C3.06c |||P-type ATPase, calcium
           transporting|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1033

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 17/65 (26%), Positives = 27/65 (41%)
 Frame = +3

Query: 12  LDFIFSKKLYLNINNEIVRSNLHLGGNGLRRPPADTVSATIPRSSNSHPESITGRELRRL 191
           ++++ + K      NE+    LH+G  G      D V A I   S   P S   + L R 
Sbjct: 402 IEYVLTDKTGTLTQNEMEMKKLHVGTMGFSAESMDVVQACIQNYSTPIPLSEDSKTLVRN 461

Query: 192 IPVQL 206
           + + L
Sbjct: 462 LVLAL 466


>SPBC25H2.03 |||vacuolar protein involved in phosphoinositide
           metabolism|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 811

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +2

Query: 242 VTSRTLELRMPKPKLHKDLSLTPPLRASLSLF 337
           V SRTLEL       HK ++L P L++ L +F
Sbjct: 493 VVSRTLELLAHIAISHKSVNLVPFLKSLLQMF 524


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1957

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 20/65 (30%), Positives = 32/65 (49%)
 Frame = +2

Query: 224  SQLKNKVTSRTLELRMPKPKLHKDLSLTPPLRASLSLFLTSLMRTVSAQKELTFLLLPRS 403
            ++LKN++     E+R+ +  L +  SL   L  SLS         + A+ EL  +L   S
Sbjct: 1393 NKLKNQLDHLNQEIRLKEDVLKEKESLIISLEESLSNQRQKESSLLDAKNELEHMLDDTS 1452

Query: 404  QKPSS 418
            +K SS
Sbjct: 1453 RKNSS 1457


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,158,144
Number of Sequences: 5004
Number of extensions: 37858
Number of successful extensions: 130
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)