Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0561
(693 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0730 - 23948801-23949079,23949528-23949588,23949828-239499... 35 0.053
10_01_0336 + 3707065-3707174,3707183-3708185 29 3.5
10_01_0145 - 1708597-1708824,1710225-1710468,1711217-1711263,171... 29 3.5
09_04_0512 + 18226981-18227143,18227648-18229555,18229649-182302... 29 3.5
07_01_0860 - 7142913-7144895 29 4.6
03_01_0401 - 3108477-3108689,3108787-3108933,3109022-3109234,310... 29 4.6
12_02_0423 + 18944555-18945226,18945309-18945545 25 5.6
05_07_0257 + 28719980-28720220,28721412-28721455,28722521-287225... 28 6.1
07_03_0602 + 19881998-19882217,19882303-19882496,19883719-198840... 28 8.1
03_01_0438 + 3399203-3399297,3399389-3399480,3399638-3399750,340... 28 8.1
02_02_0042 - 6297211-6297981 28 8.1
>06_03_0730 -
23948801-23949079,23949528-23949588,23949828-23949954,
23950449-23950485,23950987-23951061,23951489-23951598,
23952700-23952754,23952833-23952949,23953201-23953355,
23953577-23953634,23954239-23954460
Length = 431
Score = 35.1 bits (77), Expect = 0.053
Identities = 21/67 (31%), Positives = 31/67 (46%)
Frame = +1
Query: 214 GNGIAAQEQGYLKNAGVKDAEAQVAQGSFTYTSPEGIPISVSYVADENGFRPEGAHLPTP 393
G+G+ G+ +A K E Q + G T + EG +Y +D G P A P P
Sbjct: 350 GSGLHESVAGWALDARRKKEEQQSSHGGATTGATEGS----NYRSDHFGASPRSALAPPP 405
Query: 394 PPIPEAI 414
PP P+ +
Sbjct: 406 PPSPDLV 412
>10_01_0336 + 3707065-3707174,3707183-3708185
Length = 370
Score = 29.1 bits (62), Expect = 3.5
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Frame = +1
Query: 259 GVKDAEAQVAQGSFTYTSPEG----IPISVSYVADENGFRPEGAHLPTP 393
GV+D E A +F YTS G P + + VADE+ + G +P P
Sbjct: 176 GVRDEEGASATSAFNYTSSSGSWTASPAAAAAVADEDDW---GFRMPAP 221
>10_01_0145 -
1708597-1708824,1710225-1710468,1711217-1711263,
1711767-1711857,1712982-1713094,1713387-1713462,
1713501-1713560,1713759-1713835,1714105-1714672,
1715332-1715509,1715632-1715774,1717255-1717424,
1717588-1717822,1718565-1718779
Length = 814
Score = 29.1 bits (62), Expect = 3.5
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +1
Query: 16 ILYFQKNYILISIMKSFVVISTLVAMACAAPQLT 117
+ F +YI+ISI + F+ I T + C PQ T
Sbjct: 601 VFCFSSSYIIISIFRKFLAIITCIC-TCTHPQST 633
>09_04_0512 + 18226981-18227143,18227648-18229555,18229649-18230295,
18230710-18231949,18232085-18232419,18232500-18232577,
18232872-18232978,18233020-18233062
Length = 1506
Score = 29.1 bits (62), Expect = 3.5
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = +1
Query: 271 AEAQVAQGSFTYTSPEGIPISVSYVADENGFRPEGAHLPT 390
A V S Y+ I IS SYV+D+NG + AH P+
Sbjct: 936 ASQSVILNSENYSRENSITISASYVSDQNG---DQAHAPS 972
>07_01_0860 - 7142913-7144895
Length = 660
Score = 28.7 bits (61), Expect = 4.6
Identities = 12/28 (42%), Positives = 20/28 (71%)
Frame = -1
Query: 393 RSRKVSSFWAETVLISDVRNRDRDALRG 310
RS+KVS F+AE +++ +R+R+ L G
Sbjct: 368 RSKKVSEFYAEVAVLAKLRHRNLTTLVG 395
>03_01_0401 -
3108477-3108689,3108787-3108933,3109022-3109234,
3109321-3109938,3110045-3110584,3110941-3111041,
3111208-3111325,3111450-3111535,3111888-3112002
Length = 716
Score = 28.7 bits (61), Expect = 4.6
Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Frame = +1
Query: 304 YTSPEGIPISVSYVAD--ENGFRPEGAHLPTPPPIP 405
Y +P+G+ I+ + D G+ P GA+ P P+P
Sbjct: 130 YVNPDGVEITPAVYGDIYGYGYAPYGAYSPASSPVP 165
>12_02_0423 + 18944555-18945226,18945309-18945545
Length = 302
Score = 25.4 bits (53), Expect(2) = 5.6
Identities = 11/18 (61%), Positives = 11/18 (61%)
Frame = +1
Query: 343 VADENGFRPEGAHLPTPP 396
VAD FR GA LP PP
Sbjct: 79 VADGRSFRRAGAALPAPP 96
Score = 21.4 bits (43), Expect(2) = 5.6
Identities = 6/8 (75%), Positives = 8/8 (100%)
Frame = +1
Query: 382 LPTPPPIP 405
+PTPPP+P
Sbjct: 104 VPTPPPLP 111
>05_07_0257 +
28719980-28720220,28721412-28721455,28722521-28722590,
28722693-28722816,28723420-28724060,28725100-28725364,
28725434-28725713,28726042-28726209,28726867-28727358,
28727432-28727689
Length = 860
Score = 28.3 bits (60), Expect = 6.1
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Frame = +2
Query: 278 PKLHKDLSLTPPLRASLSLFLTSLMRTVSAQKELTFLLLPRSQKP--SSGLFN 430
P L + L+L P +A+L L S++ S T+L P Q+P +SGLF+
Sbjct: 638 PPLPQHLTLHPYAQATLPLGYASMIGYPSLAPSYTYLPPPAFQQPYMNSGLFH 690
>07_03_0602 +
19881998-19882217,19882303-19882496,19883719-19884039,
19885016-19885244,19885554-19885653,19886413-19886539,
19886603-19886780,19886859-19886917,19887082-19887568,
19887682-19887836,19887930-19888100,19888181-19888270,
19888714-19888872,19888940-19889223,19889435-19889498
Length = 945
Score = 27.9 bits (59), Expect = 8.1
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +1
Query: 370 EGAHLPTPPPIPEAILRALQYIE 438
E H+P PPP+ E ++R+L++ E
Sbjct: 677 ETHHVPEPPPLYEKLMRSLEHGE 699
>03_01_0438 + 3399203-3399297,3399389-3399480,3399638-3399750,
3400345-3400610,3400793-3400864,3401023-3401098,
3401241-3401339,3401432-3401586,3401679-3401783,
3401880-3401966,3402459-3402543,3402626-3402734,
3403468-3403544,3403635-3403715,3404137-3404328,
3404415-3404528,3404650-3404742,3404864-3404990,
3405075-3405151,3405455-3405502,3405588-3405657,
3405737-3405810,3405895-3406005,3406222-3406300,
3406936-3408320
Length = 1293
Score = 27.9 bits (59), Expect = 8.1
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +2
Query: 269 MPKPKLHKDLSLTPP 313
+P PKLH DL TPP
Sbjct: 1093 LPNPKLHSDLMKTPP 1107
>02_02_0042 - 6297211-6297981
Length = 256
Score = 27.9 bits (59), Expect = 8.1
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +3
Query: 93 GLRRPPADTVSATIPRSSNSHPESIT 170
GL R TV T+P SS SHP + T
Sbjct: 73 GLPREHGKTVIVTLPTSSRSHPYTAT 98
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,877,508
Number of Sequences: 37544
Number of extensions: 290947
Number of successful extensions: 1191
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1190
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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