Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0561
         (693 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0)               30   1.5  
SB_22161| Best HMM Match : Vicilin_N (HMM E-Value=0.11)                30   2.0  
SB_9049| Best HMM Match : SMC_C (HMM E-Value=0.0098)                   30   2.0  
SB_58186| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_18299| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_647| Best HMM Match : Fork_head (HMM E-Value=3.5e-21)               28   8.3  

>SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0)
          Length = 1467

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 5/50 (10%)
 Frame = +1

Query: 295 SFTYTSPEGIPISVSYVADENGFRPEGAHL-----PTPPPIPEAILRALQ 429
           S++ TSP   P S SY      + P          PTPPP+P +I   LQ
Sbjct: 567 SYSPTSPSYSPTSPSYSPSSPSYSPSSPSFHHNLRPTPPPLPLSIPLLLQ 616


>SB_22161| Best HMM Match : Vicilin_N (HMM E-Value=0.11)
          Length = 489

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 17/47 (36%), Positives = 26/47 (55%)
 Frame = +3

Query: 6   DILDFIFSKKLYLNINNEIVRSNLHLGGNGLRRPPADTVSATIPRSS 146
           D+  F+F  +  +NI  + VR   HL  NG+  PP + +S+  PR S
Sbjct: 292 DMRSFVFESREDMNIFMDEVRDKQHLKVNGV-VPPNEPLSSFRPRRS 337


>SB_9049| Best HMM Match : SMC_C (HMM E-Value=0.0098)
          Length = 661

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 17/47 (36%), Positives = 26/47 (55%)
 Frame = +3

Query: 6   DILDFIFSKKLYLNINNEIVRSNLHLGGNGLRRPPADTVSATIPRSS 146
           D+  F+F  +  +NI  + VR   HL  NG+  PP + +S+  PR S
Sbjct: 129 DMRSFVFESREDMNIFMDEVRDKQHLKVNGV-VPPNEPLSSFRPRRS 174


>SB_58186| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 652

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 15/38 (39%), Positives = 23/38 (60%)
 Frame = -1

Query: 381 VSSFWAETVLISDVRNRDRDALRGGVSERSLCNLGFGI 268
           ++S W E V+ +D+R+   DALR G   R++C    GI
Sbjct: 383 LTSIWDEEVMPADLRDASIDALREGT--RTVCENHRGI 418


>SB_18299| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 698

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +3

Query: 93  GLRRPPADTVSATIPRSSNSHPESITGRELRRLIPVQLRDR 215
           G RRP + +V    P S  + PES T R  +    V+L  +
Sbjct: 427 GARRPRSSSVQTYRPESRTNRPESRTNRTRKHSYDVKLETK 467


>SB_647| Best HMM Match : Fork_head (HMM E-Value=3.5e-21)
          Length = 491

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 4/42 (9%)
 Frame = +3

Query: 60  IVRSNLHLGGNGLR----RPPADTVSATIPRSSNSHPESITG 173
           +V++    GG GLR    +P  +TVS T+P +S   P+ +TG
Sbjct: 140 LVQTPYGAGGQGLRPILPKPSENTVSTTVPAASEPMPK-LTG 180


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,380,494
Number of Sequences: 59808
Number of extensions: 309476
Number of successful extensions: 959
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 864
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 958
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1805522550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)