Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0561
         (693 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024818-2|AAF60781.1|  302|Caenorhabditis elegans Temporarily a...    29   4.2  
U88167-1|AAB42226.1|  319|Caenorhabditis elegans Hypothetical pr...    27   9.6  
AF025463-7|AAB71007.1| 1210|Caenorhabditis elegans Hypothetical ...    27   9.6  

>AC024818-2|AAF60781.1|  302|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 262 protein.
          Length = 302

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 18/48 (37%), Positives = 25/48 (52%)
 Frame = +1

Query: 271 AEAQVAQGSFTYTSPEGIPISVSYVADENGFRPEGAHLPTPPPIPEAI 414
           + AQV Q S    +P  IPI+ + +A      P    LPT PP+P +I
Sbjct: 56  SSAQVIQPSLL-AAPPFIPIAAT-IAVSPFINPALGRLPTMPPVPPSI 101


>U88167-1|AAB42226.1|  319|Caenorhabditis elegans Hypothetical
           protein D2092.6 protein.
          Length = 319

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 11/90 (12%)
 Frame = +3

Query: 42  LNINNEIVRSNLHLGGNGLRRPPADTVSATIPRSSNSH-PESITGRELRRLIPVQLRDR- 215
           ++  N++ RS+  L   G+RR   D   +     S  + P  I  R+  RL P+  R R 
Sbjct: 26  MSTKNDVARSSW-LEYRGIRRRIEDGNESDFEDDSEVYGPPPIPERDYSRLRPLAYRKRG 84

Query: 216 ---------QWHRSSRTRLPQERWS*GCRS 278
                     + R + TRLP+++W    RS
Sbjct: 85  EEFPMRRSKSYERPNVTRLPEKKWIRNTRS 114


>AF025463-7|AAB71007.1| 1210|Caenorhabditis elegans Hypothetical
           protein K10B4.1 protein.
          Length = 1210

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 17/49 (34%), Positives = 26/49 (53%)
 Frame = +3

Query: 24  FSKKLYLNINNEIVRSNLHLGGNGLRRPPADTVSATIPRSSNSHPESIT 170
           FS+++  N +++I    LH   NGL  PPA  V   I R+   +  S+T
Sbjct: 115 FSRRIPANYDDDISTPRLHGYRNGLLPPPA-VVEKQIARTPAIYAISLT 162


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,091,492
Number of Sequences: 27780
Number of extensions: 223140
Number of successful extensions: 651
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 633
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 651
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)