Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0561
         (693 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g14805.1 68417.m02276 protease inhibitor/seed storage/lipid t...    29   2.2  
At3g60780.1 68416.m06799 expressed protein                             29   2.9  
At5g39420.1 68418.m04775 protein kinase family protein contains ...    27   8.9  
At1g70620.2 68414.m08137 cyclin-related contains weak similarity...    27   8.9  
At1g70620.1 68414.m08138 cyclin-related contains weak similarity...    27   8.9  

>At4g14805.1 68417.m02276 protease inhibitor/seed storage/lipid
           transfer protein (LTP)-related weak hit to Pfam PF00234:
           Protease inhibitor/seed storage/LTP family
          Length = 219

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 17/50 (34%), Positives = 23/50 (46%)
 Frame = +1

Query: 292 GSFTYTSPEGIPISVSYVADENGFRPEGAHLPTPPPIPEAILRALQYIES 441
           G+    SP+ + ++       + F PE A L  PPP P   L  LQY  S
Sbjct: 146 GNNVSASPQSVDLAPEVSPSSDLFSPETATLAPPPPPPP--LPVLQYFSS 193


>At3g60780.1 68416.m06799 expressed protein
          Length = 218

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +3

Query: 57  EIVRSNLHLGGNGLRRPPADTVSATIPRSSNSH 155
           EIV      GGNGLR+ P+  +    PRS   H
Sbjct: 182 EIVHVGASGGGNGLRKIPSRWIKHIDPRSGEEH 214


>At5g39420.1 68418.m04775 protein kinase family protein contains
           Pfam domain, PF00069: Protein kinase domain
          Length = 644

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = -1

Query: 423 SPEDGFWDRGRSRKVSSFWAETVLISDVRNRDRDALRGGV 304
           SP+D FW R +    +SF  +    + +R R +D    GV
Sbjct: 324 SPQDSFWKRTKLPHATSFKPQHTYEATLRERCKDLSATGV 363


>At1g70620.2 68414.m08137 cyclin-related contains weak similarity to
           Swiss-Prot:P35662 cylicin I (Multiple-band polypeptide
           I) [Bos taurus]
          Length = 884

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 15/39 (38%), Positives = 18/39 (46%), Gaps = 3/39 (7%)
 Frame = +1

Query: 304 YTSPEGIPISVSYVADENG---FRPEGAHLPTPPPIPEA 411
           Y+SP   P    + A  NG   F P     P PPP P+A
Sbjct: 82  YSSPAYPPHQPPFNAGANGNSQFPPPSTGAPIPPPYPQA 120


>At1g70620.1 68414.m08138 cyclin-related contains weak similarity to
           Swiss-Prot:P35662 cylicin I (Multiple-band polypeptide
           I) [Bos taurus]
          Length = 897

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 15/39 (38%), Positives = 18/39 (46%), Gaps = 3/39 (7%)
 Frame = +1

Query: 304 YTSPEGIPISVSYVADENG---FRPEGAHLPTPPPIPEA 411
           Y+SP   P    + A  NG   F P     P PPP P+A
Sbjct: 82  YSSPAYPPHQPPFNAGANGNSQFPPPSTGAPIPPPYPQA 120


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,510,522
Number of Sequences: 28952
Number of extensions: 214362
Number of successful extensions: 698
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 658
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 697
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1477286152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)