Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0560
         (854 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    23   2.3  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    23   2.3  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    23   2.3  
AM292368-1|CAL23180.2|  387|Tribolium castaneum gustatory recept...    22   5.4  
AM292347-1|CAL23159.2|  387|Tribolium castaneum gustatory recept...    22   5.4  
AM292327-1|CAL23139.2|  387|Tribolium castaneum gustatory recept...    22   5.4  
AM292343-1|CAL23155.2|  301|Tribolium castaneum gustatory recept...    21   9.4  

>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 11/34 (32%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
 Frame = +3

Query: 405 YPNVSR--PNLSYTVASATLPLLVITSARPSFMS 500
           YP+++R  P  +  +ASAT+ +  +++  P F S
Sbjct: 245 YPHLNRSSPTTATAIASATVTIQNVSNTIPPFAS 278


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 11/34 (32%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
 Frame = +3

Query: 405 YPNVSR--PNLSYTVASATLPLLVITSARPSFMS 500
           YP+++R  P  +  +ASAT+ +  +++  P F S
Sbjct: 193 YPHLNRSSPTTATAIASATVTIQNVSNTIPPFAS 226


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 11/34 (32%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
 Frame = +3

Query: 405 YPNVSR--PNLSYTVASATLPLLVITSARPSFMS 500
           YP+++R  P  +  +ASAT+ +  +++  P F S
Sbjct: 376 YPHLNRSSPTTATAIASATVTIQNVSNTIPPFAS 409


>AM292368-1|CAL23180.2|  387|Tribolium castaneum gustatory receptor
           candidate 47 protein.
          Length = 387

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = -2

Query: 430 KLGRLTFGYCYLHGLFYLVFH 368
           ++GR+TFG+  +  L+  VF+
Sbjct: 75  EIGRITFGWTSIPMLYAYVFY 95


>AM292347-1|CAL23159.2|  387|Tribolium castaneum gustatory receptor
           candidate 26 protein.
          Length = 387

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = -2

Query: 430 KLGRLTFGYCYLHGLFYLVFH 368
           ++GR+TFG+  +  L+  VF+
Sbjct: 75  EIGRITFGWTSIPMLYAYVFY 95


>AM292327-1|CAL23139.2|  387|Tribolium castaneum gustatory receptor
           candidate 6 protein.
          Length = 387

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = -2

Query: 430 KLGRLTFGYCYLHGLFYLVFH 368
           ++GR+TFG+  +  L+  VF+
Sbjct: 75  EIGRITFGWTSIPMLYAYVFY 95


>AM292343-1|CAL23155.2|  301|Tribolium castaneum gustatory receptor
           candidate 22 protein.
          Length = 301

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +1

Query: 355 LYNYSEILNRIIRANNSIRTLVALTC 432
           L+N  +IL +++R  N I     L C
Sbjct: 136 LFNLHKILVKVVREINGIFAFQVLMC 161


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 205,213
Number of Sequences: 336
Number of extensions: 4556
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 23659332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)