Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0560
         (854 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.09c |||ribosome biogenesis protein Noc1 |Schizosaccharo...    27   3.4  
SPAC4A8.07c |||sphingoid long chain base |Schizosaccharomyces po...    27   3.4  
SPAC8F11.07c |cdc24||DNA replication protein Cdc24|Schizosacchar...    26   5.9  
SPAC1399.05c |||transcription factor, zf-fungal binuclear cluste...    26   7.8  

>SPAC4F10.09c |||ribosome biogenesis protein Noc1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 860

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -3

Query: 237 IWPLHSFLIHFHAGVRQIAPE*LVY 163
           +W +H FL HFH  V  +A   LVY
Sbjct: 590 LWEIHPFLNHFHPTVSLLAKS-LVY 613


>SPAC4A8.07c |||sphingoid long chain base |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 458

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 26/102 (25%), Positives = 39/102 (38%), Gaps = 3/102 (2%)
 Frame = -2

Query: 508 ISPDMKLGRAEVITRSGSVALATVYDKLGRLTFGYCYL---HGLFYLVFHYNYIKHNLFR 338
           I+PD K+  A      G + +  VY K  R +    +    +G FY   H NY K   FR
Sbjct: 353 IAPDAKMFPA-ASNDDGLIDVVIVYSKQFRKSLLSMFTQLDNGGFYYSKHLNYYKVRSFR 411

Query: 337 CEDSKIGMLNTLLLTGVIVILWPRLLVINPERSNMATPLLSY 212
                 G  +   L G    L P    + P+     +P+  +
Sbjct: 412 FTPVNTGKRHYFALDGESYPLEPFECRVAPKLGTTLSPVAGF 453


>SPAC8F11.07c |cdc24||DNA replication protein
           Cdc24|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 501

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
 Frame = -2

Query: 397 LHGLFYLVFH--YNYIKHNLFRCEDSKI 320
           LH  FYL+FH  +N +K +  R   S+I
Sbjct: 118 LHSSFYLLFHEPFNILKGSTLRFSQSRI 145


>SPAC1399.05c |||transcription factor, zf-fungal binuclear cluster
           type|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 529

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 19/86 (22%), Positives = 40/86 (46%), Gaps = 4/86 (4%)
 Frame = -2

Query: 457 SVALATV--YDKLGRLTFGYCYLHGLFYLVFHYNYIKHNLFRCEDSKI--GMLNTLLLTG 290
           S AL T+    +L       C  H LF+  F    +   ++  +  ++   ++   +L  
Sbjct: 398 SYALKTIDAIFELSAYDMSRCSDHVLFHAGFASASLLRLIYAAKTKEVDTSIVQPKVLND 457

Query: 289 VIVILWPRLLVINPERSNMATPLLSY 212
           ++  +W  LLVI+ ++ ++AT   +Y
Sbjct: 458 LVTKIWKWLLVISVDQYHLATKFANY 483


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,571,064
Number of Sequences: 5004
Number of extensions: 75217
Number of successful extensions: 190
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 424464280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)