Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0560
         (854 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50019| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.1  
SB_49629| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.1  
SB_39522| Best HMM Match : PAN (HMM E-Value=0.0005)                    30   2.1  
SB_17253| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_796| Best HMM Match : No HMM Matches (HMM E-Value=.)                29   4.8  
SB_57854| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.4  
SB_30760| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.4  
SB_42269| Best HMM Match : efhand (HMM E-Value=4.8e-05)                28   8.4  
SB_27917| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  

>SB_50019| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 849

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 18/39 (46%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = -2

Query: 244 RSNMATPLLSYSFSRRCKTDR-ARIACLYVYIE*SSCRI 131
           R +  TP   +S SRRCKT   A++ACL V    S CR+
Sbjct: 83  RLSWVTP--GFSQSRRCKTTASAKLACLQVDSRGSPCRV 119


>SB_49629| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 224

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 19/41 (46%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = -2

Query: 244 RSNMATPLLSYSFSRRCKTDR-ARIACLYVYIE*SSCRIRH 125
           R +  TP   +S SRRCKT   A++ACL V    S C I H
Sbjct: 51  RLSWVTP--GFSQSRRCKTTASAKLACLQVDSRGSPCVISH 89


>SB_39522| Best HMM Match : PAN (HMM E-Value=0.0005)
          Length = 297

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +1

Query: 292 PLKAVYSACLSYYLHTETNYVLYNYS 369
           PL+ V   C+++ LH E  Y+ Y+YS
Sbjct: 10  PLRKVNEDCVTFALHNEIRYLSYSYS 35


>SB_17253| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 63

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 16/30 (53%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
 Frame = -2

Query: 244 RSNMATPLLSYSFSRRCK-TDRARIACLYV 158
           R +  TP   YS SRRCK TD A++AC+ V
Sbjct: 29  RLSWVTP--GYSQSRRCKTTDSAKLACMQV 56


>SB_796| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 319

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 4/68 (5%)
 Frame = -2

Query: 361 YIKHNLFRCEDS--KIGMLNTLLLTGV-IVILWPRL-LVINPERSNMATPLLSYSFSRRC 194
           Y+   L R +++  K+   N   L  V +   W  + L+IN + S    P+   +++ +C
Sbjct: 97  YLPKELNRVKEAAKKVYFENQFKLNSVNLKTTWKLIGLLINRKNSTSLPPITKLTYNNKC 156

Query: 193 KTDRARIA 170
            TD+A IA
Sbjct: 157 YTDKASIA 164


>SB_57854| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 562

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 21/95 (22%), Positives = 41/95 (43%), Gaps = 1/95 (1%)
 Frame = -2

Query: 457 SVALATVYDKLGRLTFGYCYLH-GLFYLVFHYNYIKHNLFRCEDSKIGMLNTLLLTGVIV 281
           +V L  V+  LG ++F    +   +  +  +Y Y  H L   E SKI       +T  + 
Sbjct: 170 TVFLVIVFPGLGVMSFCLAQVSFSVLSVGLYYAYFVHQLQTGEASKINDFPLKSMTDCLP 229

Query: 280 ILWPRLLVINPERSNMATPLLSYSFSRRCKTDRAR 176
            + P   +++ E +++       SF ++  T+  R
Sbjct: 230 AIIPGKAIVSLEMASLTWSFFKQSFLKKILTEGER 264


>SB_30760| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1868

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
 Frame = -2

Query: 373  FHYNYI-KHNLFRCEDSKIGMLNTLLL-TGVIVILWPRL-LVINPERSNMATPLLSYSFS 203
            F+ NY  K N  +    K+   N   L +G +   W  + L+IN + S    P+    ++
Sbjct: 1206 FYKNYNNKLNRVKEAAKKVYFENQFKLNSGNLKTTWKLIGLLINRKNSTSLPPIAKLIYN 1265

Query: 202  RRCKTDRARIA 170
             +C TD+A IA
Sbjct: 1266 NKCYTDKASIA 1276


>SB_42269| Best HMM Match : efhand (HMM E-Value=4.8e-05)
          Length = 901

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -1

Query: 812 CSIHLYLDRHRIRPNGYGPRQGLHYLSYDQH*DEE 708
           C +  Y ++ RIR   Y P+QG     Y+ H DEE
Sbjct: 774 CDLSRYCNQSRIR---YKPKQGTALFWYNHHRDEE 805


>SB_27917| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4554

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = -2

Query: 400 YLHGLFYLVFHYNYIKHNLFRCEDSKIGMLNTLLLTGVIVILWPRLLV 257
           ++HG F +  +   +K     C++    M N LLL  VI + +  LLV
Sbjct: 437 HIHGTFGVSDNRRNLKWPGSECQNDDFAMWNNLLLEEVISVAYANLLV 484


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,692,254
Number of Sequences: 59808
Number of extensions: 545779
Number of successful extensions: 1149
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1029
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1147
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2431332827
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)