Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0560
         (854 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92837-2|CAB07401.1|  324|Caenorhabditis elegans Hypothetical pr...    58   1e-08
Z81536-1|CAB04365.1|  333|Caenorhabditis elegans Hypothetical pr...    28   7.4  
Z75532-6|CAA99813.2|  330|Caenorhabditis elegans Hypothetical pr...    28   7.4  
Z75530-9|CAA99797.2|  330|Caenorhabditis elegans Hypothetical pr...    28   7.4  

>Z92837-2|CAB07401.1|  324|Caenorhabditis elegans Hypothetical
           protein R03E1.2 protein.
          Length = 324

 Score = 57.6 bits (133), Expect = 1e-08
 Identities = 28/50 (56%), Positives = 33/50 (66%)
 Frame = -2

Query: 853 ADYAAIFNIILWFGVVFTFTLIAIVYALMDMDPGRDSIIYRMTNTRMKKD 704
           +DY AIF I L   V+    LI IV  +  +DP +DSIIYRMT TRMKKD
Sbjct: 275 SDYPAIFAIFLGLVVILVVALIYIVVGMASIDPEKDSIIYRMTTTRMKKD 324


>Z81536-1|CAB04365.1|  333|Caenorhabditis elegans Hypothetical
           protein F40D4.1 protein.
          Length = 333

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -2

Query: 580 FVFRFIIN*HSHEAGLQKNITDFMISPDMKL 488
           F+FRFI+N  SH    Q+ +  F I+  ++L
Sbjct: 215 FIFRFIVNTKSHSRATQRLLLHFFIAMCIQL 245


>Z75532-6|CAA99813.2|  330|Caenorhabditis elegans Hypothetical
           protein C47E8.2 protein.
          Length = 330

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
 Frame = -2

Query: 853 ADYAAIFNIILWFGVV---FTFTLIAIVYALMDMDPGRDSIIYRMTNTRMKK 707
           AD A +FN+++W  VV    T T+   VY   ++   R++  Y  T  RM K
Sbjct: 191 ADPATMFNVLIWLSVVIVTLTSTIATTVYLQRNL---RENEHYSETVVRMHK 239


>Z75530-9|CAA99797.2|  330|Caenorhabditis elegans Hypothetical
           protein C47E8.2 protein.
          Length = 330

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
 Frame = -2

Query: 853 ADYAAIFNIILWFGVV---FTFTLIAIVYALMDMDPGRDSIIYRMTNTRMKK 707
           AD A +FN+++W  VV    T T+   VY   ++   R++  Y  T  RM K
Sbjct: 191 ADPATMFNVLIWLSVVIVTLTSTIATTVYLQRNL---RENEHYSETVVRMHK 239


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,646,490
Number of Sequences: 27780
Number of extensions: 414406
Number of successful extensions: 989
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 949
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 989
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2129473654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)