Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0560
         (854 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    24   1.6  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    23   3.6  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    23   3.6  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    23   3.6  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    23   3.6  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    22   6.3  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    22   8.3  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    22   8.3  

>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +1

Query: 304 VYSACLSYYLHTETNYVLYNYSEILNR 384
           + S CL YY  T  N +LYN   I  R
Sbjct: 311 ILSGCL-YYFSTTINPILYNLMSIKYR 336


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 9/30 (30%), Positives = 14/30 (46%)
 Frame = -2

Query: 454 VALATVYDKLGRLTFGYCYLHGLFYLVFHY 365
           + +A   D + R+TF   Y   L +   HY
Sbjct: 456 IRVAKTIDVIARITFPVAYFMFLTFFFIHY 485


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 9/30 (30%), Positives = 14/30 (46%)
 Frame = -2

Query: 454 VALATVYDKLGRLTFGYCYLHGLFYLVFHY 365
           + +A   D + R+TF   Y   L +   HY
Sbjct: 442 IRVAKTIDVIARITFPVAYFMFLTFFFIHY 471


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 9/30 (30%), Positives = 14/30 (46%)
 Frame = -2

Query: 454 VALATVYDKLGRLTFGYCYLHGLFYLVFHY 365
           + +A   D + R+TF   Y   L +   HY
Sbjct: 476 IRVAKTIDVIARITFPVAYFMFLTFFFIHY 505


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 9/30 (30%), Positives = 14/30 (46%)
 Frame = -2

Query: 454 VALATVYDKLGRLTFGYCYLHGLFYLVFHY 365
           + +A   D + R+TF   Y   L +   HY
Sbjct: 425 IRVAKTIDVIARITFPVAYFMFLTFFFIHY 454


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +1

Query: 307 YSACLSYYLHTETNYVLYN 363
           Y + + YYL T  N +LYN
Sbjct: 331 YMSGVFYYLSTTVNPLLYN 349


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.8 bits (44), Expect = 8.3
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = -2

Query: 454 VALATVYDKLGRLTFGYCYLHGLFYLVFHY 365
           V  AT  D    ++FGYC    L +   HY
Sbjct: 301 VRYATALDWFLLMSFGYCIATLLEFAGVHY 330


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.8 bits (44), Expect = 8.3
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -2

Query: 847 YAAIFNIILWFGVVFTFTLIAI 782
           +AAI   + +F V+FT+ +I I
Sbjct: 404 FAAIIEWLSFFIVIFTYIIILI 425


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 242,168
Number of Sequences: 438
Number of extensions: 5358
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27552579
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)