Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0560
         (854 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g07630.1 68414.m00818 protein phosphatase 2C family protein /...    29   3.9  
At1g52220.1 68414.m05892 expressed protein                             29   5.2  
At1g34150.1 68414.m04236 tRNA pseudouridine synthase family prot...    28   6.9  

>At1g07630.1 68414.m00818 protein phosphatase 2C family protein /
           PP2C family protein similar to protein phosphatase-2c
           (GI:3608412) [Mesembryanthemum crystallinum]; contains
           Pfam PF00481 : Protein phosphatase 2C domain
          Length = 662

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 16/37 (43%), Positives = 21/37 (56%)
 Frame = +3

Query: 192 LHLRENE*ERSGVAILERSGFMTSNRGQRMTITPVKS 302
           L LR    +RS V IL R+   T +RGQ   + P+KS
Sbjct: 175 LALRVGSRKRSLVRILRRAISKTMSRGQNSIVAPIKS 211


>At1g52220.1 68414.m05892 expressed protein
          Length = 156

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 20/57 (35%), Positives = 28/57 (49%)
 Frame = -2

Query: 490 LGRAEVITRSGSVALATVYDKLGRLTFGYCYLHGLFYLVFHYNYIKHNLFRCEDSKI 320
           LG A ++    S+ L T  DKL  ++ G+  +  LF   F Y Y+     R E SKI
Sbjct: 89  LGFAGIVALWASLNLITAIDKLPVISSGFELVGILFSTWFTYRYLLFKPDRQELSKI 145


>At1g34150.1 68414.m04236 tRNA pseudouridine synthase family protein
           similar to pseudouridine synthase 3 [Mus musculus]
           GI:9652099; contains Pfam profile PF01416: tRNA
           pseudouridine synthase
          Length = 446

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
 Frame = -2

Query: 214 YSFSRRCKTDRARIACL---YVYIE*SSCRIRHEGERVWTVSTR 92
           + F   CK D A + C      + E S C+  HEG+++ T + R
Sbjct: 247 HDFRNFCKMDVANVHCYTRRVTFFEVSPCQNSHEGDQLCTFTMR 290


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,204,610
Number of Sequences: 28952
Number of extensions: 376573
Number of successful extensions: 804
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 784
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 804
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1989897600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)