Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0559
         (819 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P24646 Cluster: Polyhedrin; n=212; root|Rep: Polyhedrin...   414   e-114
UniRef50_Q6JPH0 Cluster: Polyhedrin, major occlusion body protei...   247   2e-64
UniRef50_A2GVE7 Cluster: CMGC family protein kinase; n=2; Tricho...    35   2.1  
UniRef50_A2FHI5 Cluster: Putative uncharacterized protein; n=5; ...    34   3.8  
UniRef50_O17562 Cluster: Putative uncharacterized protein; n=2; ...    33   6.6  
UniRef50_A2QKS5 Cluster: Putative uncharacterized protein; n=1; ...    33   6.6  
UniRef50_Q1FFI1 Cluster: RNA binding S1; n=7; Clostridiales|Rep:...    33   8.7  
UniRef50_A0DH03 Cluster: Chromosome undetermined scaffold_5, who...    33   8.7  

>UniRef50_P24646 Cluster: Polyhedrin; n=212; root|Rep: Polyhedrin -
           Spodoptera littoralis nuclear polyhedrosis virus (SlNPV)
          Length = 249

 Score =  414 bits (1020), Expect = e-114
 Identities = 182/242 (75%), Positives = 212/242 (87%)
 Frame = +2

Query: 56  YSYTPTIGRTYVYDNKYYKNLGCLIKNAKRKKHLVEHEQEEKQWDLLDNYMVAEDPFLGP 235
           Y+Y+P +G+TYVYDNKYYKNLG +IKNAKRK   +E E +E++ D LD Y+VAEDPF+GP
Sbjct: 8   YNYSPHLGKTYVYDNKYYKNLGHVIKNAKRKHDALEREADERELDHLDKYLVAEDPFMGP 67

Query: 236 GKNQKLTLFKEIRSVKPDTMKLIVNWSGKEFLRETWTRFVEDSFPIVNDQEVMDVYLVAN 415
           GKNQKLTLFKEIR+VKPDTMKLIVNW+GKEFLRETWTRF+EDSFPIVNDQEVMDV+LV N
Sbjct: 68  GKNQKLTLFKEIRNVKPDTMKLIVNWNGKEFLRETWTRFMEDSFPIVNDQEVMDVFLVVN 127

Query: 416 LKPTRPNRCYKFLAQHALRWEEDYVPHEVIRIVEPSYVGMNNEYRISLAKKGGGCPIMNI 595
           ++PTRPNRC++FLAQHALR + +YVPH+VIRIVEPSYVG NNEYRISLAKKGGGCP+MN+
Sbjct: 128 MRPTRPNRCFRFLAQHALRCDPEYVPHDVIRIVEPSYVGTNNEYRISLAKKGGGCPVMNL 187

Query: 596 HSEYTNSFESFVNRVIWENFYKPIVYIGTDXXXXXXXXXXXXXXFKIKEFAPDAPLFTGP 775
           H+EYT SFESF+++VIW NFYKPIVY+GTD              FKIKEFAPDAPL+TGP
Sbjct: 188 HAEYTTSFESFIDKVIWYNFYKPIVYVGTDSAEEEEILLEVSLVFKIKEFAPDAPLYTGP 247

Query: 776 AY 781
           AY
Sbjct: 248 AY 249


>UniRef50_Q6JPH0 Cluster: Polyhedrin, major occlusion body protein;
           n=4; Nucleopolyhedrovirus|Rep: Polyhedrin, major
           occlusion body protein - Neodiprion lecontii NPV
          Length = 247

 Score =  247 bits (605), Expect = 2e-64
 Identities = 109/236 (46%), Positives = 159/236 (67%), Gaps = 1/236 (0%)
 Frame = +2

Query: 71  TIGRTYVYDNKYYKNLGCLIKNAKRKKHLVEHEQEEKQWDLLDNYMVAEDPFLGPGKNQK 250
           T  ++Y+YDNKYY+ LG +I +AK++KH  + E+  ++   L+ +++  DP  GPGK+ K
Sbjct: 11  TSAKSYIYDNKYYRGLGDIINSAKKRKHDQDWEKHAEERRALNGFILPLDPRTGPGKHVK 70

Query: 251 LTLFKEIRSVKPDTMKLIVNWSGKEFLRETWTRFVEDSFPIVNDQEVMDVYLVANLKPTR 430
           + +F+E+R++K +TMKL +NWSG+E+LRE WT F+ED+FPI N QE  DV+L     P +
Sbjct: 71  MVMFQEVRNIKANTMKLAINWSGREYLREVWTTFIEDTFPINNYQEFTDVFLEIRCTPNK 130

Query: 431 PNRCYKFLAQHALRWEEDYVPHEVIRIVEPSYVGMNNEYRISLAKKGGGCPIMNIHSEYT 610
            NR Y+FLAQH LR +ED+VP + IR++EP Y+   N   +SL K+ GGCP+M I  ++ 
Sbjct: 131 SNRHYRFLAQHGLRMDEDFVPCDTIRVIEPEYL-QGNTVSLSLLKRDGGCPMMKIRQQFN 189

Query: 611 N-SFESFVNRVIWENFYKPIVYIGTDXXXXXXXXXXXXXXFKIKEFAPDAPLFTGP 775
               E FV+R++W +F++PIVYIGTD              F IKEFAP+AP   GP
Sbjct: 190 ELDLEQFVDRILWCHFHRPIVYIGTDSGEEEEVFIEASLTFIIKEFAPEAPFVNGP 245


>UniRef50_A2GVE7 Cluster: CMGC family protein kinase; n=2;
           Trichomonas vaginalis G3|Rep: CMGC family protein kinase
           - Trichomonas vaginalis G3
          Length = 340

 Score = 35.1 bits (77), Expect = 2.1
 Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
 Frame = +2

Query: 134 NAKRKKHLVEHEQEEKQWDLLDNYMVAEDPFLGPGKNQKLTLFKEIRSVKPD-TMKLIVN 310
           N ++     +H+  E QW+L DNY + +   +G GK    T+FK +   + +  +K++V 
Sbjct: 20  NQQKGPEWYDHKSYEPQWNLPDNYSLIKK--VGRGKYS--TVFKAVHKRRTECAIKILVP 75

Query: 311 WSGKEFLRE 337
              K +LRE
Sbjct: 76  LDPKRYLRE 84


>UniRef50_A2FHI5 Cluster: Putative uncharacterized protein; n=5;
           Trichomonas vaginalis G3|Rep: Putative uncharacterized
           protein - Trichomonas vaginalis G3
          Length = 468

 Score = 34.3 bits (75), Expect = 3.8
 Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
 Frame = +2

Query: 317 GKEFLRETWTRFVEDSFPIVNDQEVMDVYLVANLKP--TRPNRCYKFLAQHALRWEEDY 487
           G EFL   +T FV+ ++  +N++   D+Y  A ++    +   C  F A     ++E+Y
Sbjct: 103 GIEFLTNIFTEFVKSTYKEINEENFYDIYDCATIQNDINKVEECISFFASKMNDFQEEY 161


>UniRef50_O17562 Cluster: Putative uncharacterized protein; n=2;
           Caenorhabditis|Rep: Putative uncharacterized protein -
           Caenorhabditis elegans
          Length = 623

 Score = 33.5 bits (73), Expect = 6.6
 Identities = 25/76 (32%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
 Frame = +3

Query: 303 SSTGAAKSFCVKLGPVLLRTASPL*TTKR*WTCTSSPTSNPHAPTGATSSSLNTLLGGKK 482
           SST +  S  +      + T++P  T K   T TS+PTS   + T A  ++ +       
Sbjct: 162 SSTASVSSTILSSTATTMVTSTPT-TEKSSTTTTSTPTSEATSTTTAMITTTSGTTENPT 220

Query: 483 TT-CPTK*SELWSHPT 527
           TT CPTK      HPT
Sbjct: 221 TTDCPTKVCRYGFHPT 236


>UniRef50_A2QKS5 Cluster: Putative uncharacterized protein; n=1;
           Aspergillus niger|Rep: Putative uncharacterized protein
           - Aspergillus niger
          Length = 329

 Score = 33.5 bits (73), Expect = 6.6
 Identities = 20/57 (35%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
 Frame = +3

Query: 303 SSTGAAKSFCVKLGPVLLRTASPL*TTKR*WTCTSSP-TSNPHAPTGATSSSLNTLL 470
           S++ + ++  ++L P++L  ASP  +T   +T T+SP TS P   + ATS  L  +L
Sbjct: 39  SNSSSPRTMHIRLPPLMLPGASPRLSTLEPFTTTTSPSTSFPSPSSSATSDPLADIL 95


>UniRef50_Q1FFI1 Cluster: RNA binding S1; n=7; Clostridiales|Rep:
           RNA binding S1 - Clostridium phytofermentans ISDg
          Length = 279

 Score = 33.1 bits (72), Expect = 8.7
 Identities = 29/125 (23%), Positives = 57/125 (45%), Gaps = 3/125 (2%)
 Frame = +2

Query: 203 YMVAEDPFLGPGKNQKLTLFKEIRSVKPDTMKLIVNWSGKEFLRETWTRFVEDSFPIVND 382
           Y  +ED  +      KLTL KEI  +K   +  I  +      ++ +  F E + P++ D
Sbjct: 56  YKDSEDRPIATQTTPKLTL-KEIAVLKVKEVTTIGAFLDWGIAKDLFLPFKEQTHPVIAD 114

Query: 383 QEVM-DVYLVANLKPTRPNRCYKFLAQHALRWEEDYVPHEVIRIVEP--SYVGMNNEYRI 553
           +EV+  +Y+  + +     + Y  L   +   ++D V   V  I+    ++V ++N+Y  
Sbjct: 115 EEVLVSLYIDKSKRLCATMKIYDMLQTDSPYGKDDKVTGIVYEIIPAFGAFVAVDNKYSA 174

Query: 554 SLAKK 568
            +  K
Sbjct: 175 LIPNK 179


>UniRef50_A0DH03 Cluster: Chromosome undetermined scaffold_5, whole
            genome shotgun sequence; n=1; Paramecium tetraurelia|Rep:
            Chromosome undetermined scaffold_5, whole genome shotgun
            sequence - Paramecium tetraurelia
          Length = 2443

 Score = 33.1 bits (72), Expect = 8.7
 Identities = 14/27 (51%), Positives = 17/27 (62%), Gaps = 4/27 (14%)
 Frame = -2

Query: 113  FCNIYCRTR----KYARWWGCMNNSAY 45
            +CNI+ RTR      A +WGCMN S Y
Sbjct: 1648 YCNIWYRTRYSCENIANYWGCMNTSMY 1674


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 850,554,547
Number of Sequences: 1657284
Number of extensions: 18220044
Number of successful extensions: 52325
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 49639
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52248
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 71200899835
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)