Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0557
         (761 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A4KWG0 Cluster: Reverse transcriptase; n=3; Ostrinia nu...    58   2e-07
UniRef50_O16589 Cluster: Putative uncharacterized protein F21E9....    35   1.9  
UniRef50_Q10126 Cluster: Uncharacterized protein F52C9.6; n=7; C...    35   1.9  
UniRef50_UPI0000E4958A Cluster: PREDICTED: similar to endonuclea...    33   5.8  
UniRef50_A4BRW4 Cluster: MOFRL family protein; n=1; Nitrococcus ...    33   5.8  

>UniRef50_A4KWG0 Cluster: Reverse transcriptase; n=3; Ostrinia
           nubilalis|Rep: Reverse transcriptase - Ostrinia
           nubilalis (European corn borer)
          Length = 497

 Score = 58.0 bits (134), Expect = 2e-07
 Identities = 38/87 (43%), Positives = 51/87 (58%), Gaps = 11/87 (12%)
 Frame = -2

Query: 535 CLRTIIFDK*MLPKMTYGCQMWVLAKGLIG*VRL-PRALEGAR--VSLLDRIRNEEMHKN 365
           CL++ +FD+ +LP M YG + W L  GLI  +++  RA+E A   VSL DRIRNEE+ + 
Sbjct: 349 CLKSKVFDQCVLPVMVYGSETWSLTMGLIRRLKVTQRAMERAMLGVSLRDRIRNEEIRRR 408

Query: 364 LTVGLYG*R--------GGHIARRSDG 308
             V     R         GHIARR+DG
Sbjct: 409 TRVTDIARRIAKIKWQWAGHIARRADG 435


>UniRef50_O16589 Cluster: Putative uncharacterized protein F21E9.5;
           n=1; Caenorhabditis elegans|Rep: Putative
           uncharacterized protein F21E9.5 - Caenorhabditis elegans
          Length = 864

 Score = 35.1 bits (77), Expect = 1.9
 Identities = 22/57 (38%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
 Frame = -2

Query: 532 LRTIIFDK*MLPKMTYGCQMWVLAKGLIG*VRLPR-ALEGARVSL-LDRIRNEEMHK 368
           LR  +FD  +LP +TYG + W   K L   VR+   ALE   V L L   R   +H+
Sbjct: 683 LRANLFDSTVLPALTYGSEAWTFTKELAERVRVTHAALERKLVGLTLTEQRKRNIHR 739


>UniRef50_Q10126 Cluster: Uncharacterized protein F52C9.6; n=7;
           Caenorhabditis elegans|Rep: Uncharacterized protein
           F52C9.6 - Caenorhabditis elegans
          Length = 279

 Score = 35.1 bits (77), Expect = 1.9
 Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
 Frame = -2

Query: 532 LRTIIFDK*MLPKMTYGCQMWVLAKGLIG*VRLPRA-LEGARVSL-LDRIRNEEMHK 368
           +R  +FD  +LP +TYG + W   K L   VR+  A LE   V + L + R  ++H+
Sbjct: 123 IRVNLFDSIVLPALTYGSEAWTFNKALSERVRITHASLERRLVGITLTQQRERDLHR 179


>UniRef50_UPI0000E4958A Cluster: PREDICTED: similar to
           endonuclease-reverse transcriptase, partial; n=7;
           Strongylocentrotus purpuratus|Rep: PREDICTED: similar to
           endonuclease-reverse transcriptase, partial -
           Strongylocentrotus purpuratus
          Length = 787

 Score = 33.5 bits (73), Expect = 5.8
 Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 5/64 (7%)
 Frame = -2

Query: 532 LRTIIFDK*MLPKMTYGCQMWVLAKG-----LIG*VRLPRALEGARVSLLDRIRNEEMHK 368
           L+  I+   +LP  TYG + W L K       +  +R  R + G  V L+D+IRNEE+ +
Sbjct: 373 LKVRIYRALILPIATYGAESWTLRKSDRNKLEVFEMRCLRTILG--VHLMDKIRNEEIRQ 430

Query: 367 NLTV 356
            L +
Sbjct: 431 RLNI 434


>UniRef50_A4BRW4 Cluster: MOFRL family protein; n=1; Nitrococcus
           mobilis Nb-231|Rep: MOFRL family protein - Nitrococcus
           mobilis Nb-231
          Length = 408

 Score = 33.5 bits (73), Expect = 5.8
 Identities = 23/67 (34%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
 Frame = +3

Query: 261 SSALSPVENFVALALAPSLLRAICPPLQPYNPT--VRFLCISSFLIRSNKETRAPS-KAL 431
           S  LSP      LA  P  LR +CPP +P        F  I   L+ SN++ RA +  A 
Sbjct: 200 SGLLSPDSQASGLATLPLALRRLCPPAEPAPRANEALFQSIQWQLVASNRQARAAAVNAA 259

Query: 432 GSLTYPI 452
            +L  P+
Sbjct: 260 HALGLPV 266


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 791,132,575
Number of Sequences: 1657284
Number of extensions: 16076505
Number of successful extensions: 33848
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 32825
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33834
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 63381147830
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)