Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0557
         (761 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0206 - 32353308-32353566,32353784-32354024,32354408-323546...    31   1.0  
07_01_0347 - 2509229-2509487,2509682-2509922,2510292-2510511,251...    30   2.3  
01_03_0197 + 13700225-13700278,13701178-13702422                       29   3.1  
01_07_0374 + 43144861-43144998,43145695-43145794,43146499-431466...    29   4.0  
07_03_1089 - 23879483-23881909                                         29   5.3  

>03_06_0206 -
           32353308-32353566,32353784-32354024,32354408-32354627,
           32354981-32355316,32355632-32355688,32355787-32355810
          Length = 378

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 14/26 (53%), Positives = 17/26 (65%)
 Frame = -2

Query: 274 DNALEREQRGENLNKMCVSDKILSHS 197
           D AL REQ+ +N  KM V DKI  +S
Sbjct: 295 DKALSREQKNKNAGKMYVQDKIEEYS 320


>07_01_0347 -
           2509229-2509487,2509682-2509922,2510292-2510511,
           2510943-2511278,2512047-2512103,2512187-2512210
          Length = 378

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 14/26 (53%), Positives = 17/26 (65%)
 Frame = -2

Query: 274 DNALEREQRGENLNKMCVSDKILSHS 197
           D AL REQ+ +N  KM V DKI  +S
Sbjct: 295 DKALSREQKNKNGGKMYVQDKIEEYS 320


>01_03_0197 + 13700225-13700278,13701178-13702422
          Length = 432

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +2

Query: 467 YPHLTTVCHLWQHLLIKD 520
           YP + +VCH+W H LI D
Sbjct: 20  YPTVLSVCHVWTHELIMD 37


>01_07_0374 + 43144861-43144998,43145695-43145794,43146499-43146651,
            43147383-43150081
          Length = 1029

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
 Frame = +3

Query: 261  SSALSPVENFV--ALALAPSLLRAICPPLQPYNPTVRFL 371
            S +  P+++F+  A A  PSLL  + P LQ   P +RFL
Sbjct: 985  SKSKVPLQSFLFPAKAKKPSLLARVTPVLQKQQPDLRFL 1023


>07_03_1089 - 23879483-23881909
          Length = 808

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 15/31 (48%), Positives = 15/31 (48%)
 Frame = +2

Query: 596 RHSPLDTCSKVSFLTVQRLPHHSNRNALLLH 688
           RHSP  TC   SFL   R  H     A LLH
Sbjct: 28  RHSPAPTCPSSSFLRALRCLHARLLTADLLH 58


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,725,006
Number of Sequences: 37544
Number of extensions: 462460
Number of successful extensions: 962
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 939
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 962
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)