Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0557
         (761 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53101| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_10020| Best HMM Match : Extensin_2 (HMM E-Value=0.88)               29   4.1  
SB_45611| Best HMM Match : p450 (HMM E-Value=0)                        28   7.2  
SB_30749| Best HMM Match : FARP (HMM E-Value=0.032)                    28   9.5  

>SB_53101| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 118

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
 Frame = -2

Query: 424 LEGARVSLLDRIRNEEMHK--NLTVGLYG*RGGHIARRSDGANA 299
           +EG RVSL  ++ +E + K      GL+G  G    + ++GAN+
Sbjct: 1   MEGGRVSLSRKVEDECIEKLGKTADGLFGRHGSRAQKHAEGANS 44


>SB_10020| Best HMM Match : Extensin_2 (HMM E-Value=0.88)
          Length = 379

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +3

Query: 261 SSALSPVENFVALALAPSLLRAICPPLQPYNPTVR 365
           +SA  P +    ++ +PSL+    PP  PY P++R
Sbjct: 337 ASASYPYKTLPRISTSPSLVSLQAPPSYPYKPSLR 371


>SB_45611| Best HMM Match : p450 (HMM E-Value=0)
          Length = 847

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
 Frame = +3

Query: 216 SLTHILLRFS--PRCSLSSALSPVENFVALALAPSLLRAICPPLQPYNP 356
           S+T  LL F   PR  +   L+  E F+ LAL     R  CPP Q   P
Sbjct: 772 SMTDNLLPFGAGPRICMGENLARTELFLILALLLKQFRFECPPGQQMAP 820


>SB_30749| Best HMM Match : FARP (HMM E-Value=0.032)
          Length = 2565

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = -3

Query: 639  VKNETLEHVSKGEWRHLPRRYTRWAV 562
            VK+E   H  KG ++ + R+Y++W +
Sbjct: 1547 VKSEFYYHAKKGGFKKVKRKYSKWII 1572


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,962,969
Number of Sequences: 59808
Number of extensions: 520784
Number of successful extensions: 1207
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1207
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2082369341
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)