Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0557
         (761 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC103567-9|AAL35735.1|  204|Caenorhabditis elegans Hypothetical ...    37   0.018
U58735-1|AAC48148.1|  891|Caenorhabditis elegans Hypothetical pr...    36   0.031
AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse trans...    36   0.031
AF025462-7|AAB71003.1|  805|Caenorhabditis elegans Hypothetical ...    36   0.031
AC087794-3|AAG53700.1|  417|Caenorhabditis elegans Hypothetical ...    36   0.031
AF016663-5|AAC70880.1|  864|Caenorhabditis elegans Hypothetical ...    35   0.055
AC006722-6|AAK68411.2|  488|Caenorhabditis elegans Hypothetical ...    29   4.8  
AC006645-11|AAF39850.1|  472|Caenorhabditis elegans Hypothetical...    29   4.8  
AC006722-5|AAK68410.3|  703|Caenorhabditis elegans Hypothetical ...    28   8.3  
AC006645-10|AAF39849.1|  746|Caenorhabditis elegans Hypothetical...    28   8.3  

>AC103567-9|AAL35735.1|  204|Caenorhabditis elegans Hypothetical
           protein Y51F10.8 protein.
          Length = 204

 Score = 36.7 bits (81), Expect = 0.018
 Identities = 22/57 (38%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
 Frame = -2

Query: 532 LRTIIFDK*MLPKMTYGCQMWVLAKGLIG*VRLPR-ALEGARVSL-LDRIRNEEMHK 368
           LR  +FD  +LP +TYG + W   K L+  VR+   ALE   V L L   R   +H+
Sbjct: 46  LRANLFDSTVLPALTYGSEAWTFTKELVERVRVTHAALERKLVGLTLTEQRERNIHR 102


>U58735-1|AAC48148.1|  891|Caenorhabditis elegans Hypothetical
           protein F20B4.7 protein.
          Length = 891

 Score = 35.9 bits (79), Expect = 0.031
 Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
 Frame = -2

Query: 532 LRTIIFDK*MLPKMTYGCQMWVLAKGLIG*VRLPRA-LEGARVSL-LDRIRNEEMHK 368
           +R  +FD  +LP +TYG + W   K L   VR+  A LE   V + L + R  ++H+
Sbjct: 735 IRANLFDSIILPALTYGSEAWTFTKALSERVRITHASLERRLVGITLTQQRERDLHR 791


>AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse
            transcriptase protein.
          Length = 1066

 Score = 35.9 bits (79), Expect = 0.031
 Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
 Frame = -2

Query: 532  LRTIIFDK*MLPKMTYGCQMWVLAKGLIG*VRLPRA-LEGARVSL-LDRIRNEEMHK 368
            +R  +FD  +LP +TYG + W   K L   VR+  A LE   V + L + R  ++H+
Sbjct: 910  IRANLFDSIVLPALTYGSEAWTFTKALSERVRITHASLERRLVGITLTQQRERDLHR 966


>AF025462-7|AAB71003.1|  805|Caenorhabditis elegans Hypothetical
           protein K10F12.5 protein.
          Length = 805

 Score = 35.9 bits (79), Expect = 0.031
 Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
 Frame = -2

Query: 532 LRTIIFDK*MLPKMTYGCQMWVLAKGLIG*VRLPRA-LEGARVSL-LDRIRNEEMHK 368
           +R  +FD  +LP +TYG + W   K L   VR+  A LE   V + L + R  ++H+
Sbjct: 649 IRANLFDSIVLPALTYGSEAWTFTKALSERVRITHASLERRLVGITLTQQRERDLHR 705


>AC087794-3|AAG53700.1|  417|Caenorhabditis elegans Hypothetical
           protein Y32G9A.9 protein.
          Length = 417

 Score = 35.9 bits (79), Expect = 0.031
 Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
 Frame = -2

Query: 532 LRTIIFDK*MLPKMTYGCQMWVLAKGLIG*VRLPRA-LEGARVSL-LDRIRNEEMHK 368
           +R  +FD  +LP +TYG + W   K L   VR+  A LE   V + L + R  ++H+
Sbjct: 261 IRANLFDSIVLPALTYGSEAWTFTKALSERVRITHASLERRLVGITLTQQRERDLHR 317


>AF016663-5|AAC70880.1|  864|Caenorhabditis elegans Hypothetical
           protein F21E9.5 protein.
          Length = 864

 Score = 35.1 bits (77), Expect = 0.055
 Identities = 22/57 (38%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
 Frame = -2

Query: 532 LRTIIFDK*MLPKMTYGCQMWVLAKGLIG*VRLPR-ALEGARVSL-LDRIRNEEMHK 368
           LR  +FD  +LP +TYG + W   K L   VR+   ALE   V L L   R   +H+
Sbjct: 683 LRANLFDSTVLPALTYGSEAWTFTKELAERVRVTHAALERKLVGLTLTEQRKRNIHR 739


>AC006722-6|AAK68411.2|  488|Caenorhabditis elegans Hypothetical
           protein Y19D10A.11 protein.
          Length = 488

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 18/58 (31%), Positives = 26/58 (44%)
 Frame = +3

Query: 228 ILLRFSPRCSLSSALSPVENFVALALAPSLLRAICPPLQPYNPTVRFLCISSFLIRSN 401
           I LR       + A+     +V   LAP ++  ICP   P   T+ FL I+  +I  N
Sbjct: 406 IQLRCRQHVHFAIAVISFTAYVVQFLAPIIVSIICPDNTPEQWTILFLFITGVIIVCN 463


>AC006645-11|AAF39850.1|  472|Caenorhabditis elegans Hypothetical
           protein F56A4.12 protein.
          Length = 472

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 18/58 (31%), Positives = 26/58 (44%)
 Frame = +3

Query: 228 ILLRFSPRCSLSSALSPVENFVALALAPSLLRAICPPLQPYNPTVRFLCISSFLIRSN 401
           I LR       + A+     +V   LAP ++  ICP   P   T+ FL I+  +I  N
Sbjct: 390 IQLRCRQHVHFAIAVISFTAYVVQFLAPIIVSIICPDNTPEQWTILFLFITGVIIVCN 447


>AC006722-5|AAK68410.3|  703|Caenorhabditis elegans Hypothetical
           protein Y19D10A.10 protein.
          Length = 703

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
 Frame = +3

Query: 207 NILSLTHIL-LRFSPRCSLSSALSPVENFVALALAPSLLRAICPPLQPYNPTVRFLCISS 383
           N++ +  ++ LR       + A+     ++   LAP ++  ICP   P   T  FL IS+
Sbjct: 613 NVMGVFKVVQLRCLQHVHFAIAVISFTTYLVQFLAPVIVGIICPDNTPAQWTTLFLVISA 672

Query: 384 FLI 392
            +I
Sbjct: 673 III 675


>AC006645-10|AAF39849.1|  746|Caenorhabditis elegans Hypothetical
           protein F56A4.11 protein.
          Length = 746

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
 Frame = +3

Query: 207 NILSLTHIL-LRFSPRCSLSSALSPVENFVALALAPSLLRAICPPLQPYNPTVRFLCISS 383
           N++ +  ++ LR       + A+     ++   LAP ++  ICP   P   T  FL IS+
Sbjct: 656 NVMGVFKVVQLRCLQHVHFAIAVISFTTYLVQFLAPVIVGIICPDNTPAQWTTLFLVISA 715

Query: 384 FLI 392
            +I
Sbjct: 716 III 718


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,236,475
Number of Sequences: 27780
Number of extensions: 387042
Number of successful extensions: 816
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 774
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 816
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1819579054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)