Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0557
         (761 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g18773.1 68416.m02383 zinc finger (C3HC4-type RING finger) fa...    28   7.8  
At1g47730.1 68414.m05306 F-box family protein contains Pfam PF00...    28   7.8  

>At3g18773.1 68416.m02383 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 220

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +2

Query: 542 LRWLDE-LTAHLVYLRGKCRHSPLDTCSKV 628
           LR +D+ LT H+     KCRH  +DTC KV
Sbjct: 155 LRCIDKWLTQHMTC--PKCRHCLVDTCQKV 182


>At1g47730.1 68414.m05306 F-box family protein contains Pfam
           PF00646: F-box domain; contains TIGRFAM TIGR01640 :
           F-box protein interaction domain; identical to
           hypothetical protein GB:AAD46016 GI:5668790 from
           (Arabidopsis thaliana)
          Length = 391

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 11/22 (50%), Positives = 16/22 (72%), Gaps = 3/22 (13%)
 Frame = -3

Query: 72  ENLFRRQWMCHT---LSYVEPG 16
           EN+ +R+W CHT   +S+ EPG
Sbjct: 291 ENVEQREWSCHTYLPISHYEPG 312


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,174,546
Number of Sequences: 28952
Number of extensions: 365913
Number of successful extensions: 775
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 760
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 774
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1702303248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)