Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0556
         (800 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC31H12.03c |||transcriptional regulator|Schizosaccharomyces p...    33   0.036
SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar...    27   3.1  
SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces...    26   7.2  
SPAC328.07c |||heavy metal ion homeostasis protein |Schizosaccha...    25   9.5  

>SPCC31H12.03c |||transcriptional regulator|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 245

 Score = 33.5 bits (73), Expect = 0.036
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
 Frame = -3

Query: 579 TRNPSPRQSSRASLEYLLLPPRSAPTEAPSGLTPRPFCALR-RARPTRYGLMIPN 418
           ++NP  R +SR+       PP+SAP++  S +   P  A + R R  R+G+   N
Sbjct: 191 SKNPQNRSNSRSKQRNKNAPPKSAPSKRKSNILDDPIEAEKARKRAERFGVAAKN 245


>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
            subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1689

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +3

Query: 3    SWRRYKILKQSHPVKRMIRGIGAETTSTYSQ 95
            S + YK L Q + VK ++  + +ET S+Y++
Sbjct: 1082 SAKNYKSLIQKYKVKSVLSAVDSETASSYAK 1112


>SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 567

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 18/53 (33%), Positives = 25/53 (47%)
 Frame = -3

Query: 609 DRLTREQLLFTRNPSPRQSSRASLEYLLLPPRSAPTEAPSGLTPRPFCALRRA 451
           D L R Q    RNP PR+  R S   L  P  S  + + + L  +P  +L +A
Sbjct: 118 DLLLRHQQKIHRNPQPRR-RRRSTTALPNPSLSNVSVSTTNLASKPVISLPQA 169


>SPAC328.07c |||heavy metal ion homeostasis protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 277

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -1

Query: 773 TLVFKDEGTIIETVPLPGSGIGTGFPFAQRALFFIIF 663
           T+V  D G+    + + G  +GTGF F   A   I+F
Sbjct: 139 TMVIPDYGS--NEIYIDGMSVGTGFSFVWSACVAILF 173


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,414,748
Number of Sequences: 5004
Number of extensions: 72239
Number of successful extensions: 191
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)