Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0556
         (800 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0894 + 7047273-7048277,7049124-7049549                           35   0.087
04_01_0610 - 7997406-7998047,7998379-7998426,8000719-8001143,800...    31   0.81 
03_05_0543 - 25404630-25405408,25405461-25405605                       29   4.3  
07_03_1231 + 25047067-25047262,25047876-25048045,25048897-250490...    28   7.5  
01_01_0094 - 730484-731570,732030-732715                               28   7.5  
12_02_1002 + 25176434-25176501,25176613-25176859,25178106-251781...    28   9.9  
06_03_0099 + 16633928-16638213,16638299-16638386,16638823-166389...    28   9.9  
05_02_0003 + 5520331-5520476,5520572-5520644,5520762-5520928,552...    28   9.9  

>01_01_0894 + 7047273-7048277,7049124-7049549
          Length = 476

 Score = 34.7 bits (76), Expect = 0.087
 Identities = 29/79 (36%), Positives = 39/79 (49%), Gaps = 4/79 (5%)
 Frame = -3

Query: 303 GFRLPWPPSCCHERPTPFMVSHERFLGALTLRLVHPTA----PVLLTKIGPLGTVIRSPA 136
           G+RLP PPS    R  PF+  H   LG+L  R +   A    PV+L   G + TV+ S A
Sbjct: 43  GWRLPLPPS---PRGVPFL-GHLPLLGSLPHRKLRSMAEAHGPVMLLWFGRVPTVVASSA 98

Query: 135 SSFE*AGVLTHLKFENRLR 79
           +S + A       F +R R
Sbjct: 99  ASAQEAMRARDAAFASRAR 117


>04_01_0610 -
           7997406-7998047,7998379-7998426,8000719-8001143,
           8002301-8002589
          Length = 467

 Score = 31.5 bits (68), Expect = 0.81
 Identities = 21/53 (39%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
 Frame = -3

Query: 597 REQLLFTRNPSPRQSSRASLEYLLLPPRSAP--TEAPSGLTPRPFCALRRARP 445
           +E + F +NP     SR  L  LLLPP   P   +AP    PRP+C     RP
Sbjct: 369 QEVVDFLKNPD----SRRLLLLLLLPPPGPPPLAQAPPRHPPRPWCRPHTPRP 417


>03_05_0543 - 25404630-25405408,25405461-25405605
          Length = 307

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 6/48 (12%)
 Frame = -3

Query: 570 PSPRQSSRASLEYLLLPP---RSAPTEAPSGLTP---RPFCALRRARP 445
           P PR+   A L  +  PP   R AP  AP+ LTP   + F A RR  P
Sbjct: 136 PEPRRPPAAPLPGVRTPPSPPRRAPAPAPAPLTPALSQRFLAERRPAP 183


>07_03_1231 +
           25047067-25047262,25047876-25048045,25048897-25049030,
           25049122-25049369,25049799-25049904,25049992-25050130,
           25050258-25050385,25050472-25050733
          Length = 460

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 14/26 (53%), Positives = 16/26 (61%)
 Frame = -1

Query: 179 LPKLAHLAPSSDLRLHRSSKPEFSPI 102
           L  L +LAP  DLR+  SSKP F  I
Sbjct: 259 LETLVNLAPVLDLRIFSSSKPSFIKI 284


>01_01_0094 - 730484-731570,732030-732715
          Length = 590

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -3

Query: 309 LSGFRLPWPPSCCHERPTPFMVSHERFLGALT 214
           + G +LP  P  C + P P +V   RF   LT
Sbjct: 552 VDGLQLPSRPFFCDDEPLPLLVDSYRFSSELT 583


>12_02_1002 +
           25176434-25176501,25176613-25176859,25178106-25178171,
           25178754-25178822,25179007-25179080,25180850-25180991,
           25181546-25181596,25181769-25181774
          Length = 240

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +3

Query: 498 PPSVQILVVVANTPARPW 551
           PPS  +LV+V   P RPW
Sbjct: 174 PPSSALLVIVEEGPTRPW 191


>06_03_0099 +
           16633928-16638213,16638299-16638386,16638823-16638950,
           16640008-16640278
          Length = 1590

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 16/31 (51%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
 Frame = -3

Query: 345 GWLLRQVSRCTLLSGFRL---PWPPSCCHER 262
           G+LLR  +   LLS  RL   P PP CCH R
Sbjct: 63  GYLLRHSAHFLLLSA-RLRPPPPPPRCCHRR 92


>05_02_0003 +
           5520331-5520476,5520572-5520644,5520762-5520928,
           5520929-5521223,5521531-5521674,5521756-5521890,
           5522004-5522093,5523702-5523809,5523905-5523986,
           5525362-5525417,5525888-5525986,5526090-5526394,
           5526898-5527075,5527167-5527280,5527376-5527507,
           5527614-5527718
          Length = 742

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 17/55 (30%), Positives = 29/55 (52%)
 Frame = +2

Query: 182 RTGAVG*TKRSVKAPKKRSWDTMKGVGRS*QQDGGHGSRNPLRSVQRLTCRSNQP 346
           +TG  G  KR +KA +K S+D +    R  QQ G + + +   ++Q+   +S  P
Sbjct: 267 KTGDFG--KRPIKAMEKLSYDAICSGARCIQQQGNNSNMSRSDALQQYHSKSFNP 319


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,797,157
Number of Sequences: 37544
Number of extensions: 562611
Number of successful extensions: 1661
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1606
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1661
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2174172540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)