Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0556
         (800 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF043433-1|AAC05656.1|  231|Anopheles gambiae putative pupal-spe...    25   2.7  
AY753541-1|AAV28544.1| 3398|Anopheles gambiae SGS4 protein.            25   3.6  
AB090817-2|BAC57910.1| 1009|Anopheles gambiae reverse transcript...    24   4.8  
M93691-1|AAA29366.1|  574|Anopheles gambiae protein ( Anopheles ...    23   8.3  

>AF043433-1|AAC05656.1|  231|Anopheles gambiae putative
           pupal-specific cuticular proteinprotein.
          Length = 231

 Score = 25.0 bits (52), Expect = 2.7
 Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
 Frame = -1

Query: 524 YHQDLHRRRLQAGSRPDPSALSVAH-VLLVTA**YQIKNLASHVPVTVVYRQNASAPSI 351
           YH D H     A  RP+PSA+ +A  V  V A    + + A H PV     Q+  A  I
Sbjct: 128 YHAD-HHTGFNAVVRPEPSAVKIAQPVHKVIAQPVHVSSYA-HAPVAHATVQHHHAAPI 184


>AY753541-1|AAV28544.1| 3398|Anopheles gambiae SGS4 protein.
          Length = 3398

 Score = 24.6 bits (51), Expect = 3.6
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +3

Query: 654 IIFKNNEK*RPLSERESGSYSGTRQRNRF 740
           IIF  N +   + ER  GS+S   +RN F
Sbjct: 37  IIFVRNNRALLIYERMGGSWSEVHKRNNF 65


>AB090817-2|BAC57910.1| 1009|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1009

 Score = 24.2 bits (50), Expect = 4.8
 Identities = 13/48 (27%), Positives = 25/48 (52%)
 Frame = -1

Query: 575 ETLLHVSPPGPRWSICYYHQDLHRRRLQAGSRPDPSALSVAHVLLVTA 432
           +++ ++S P   WSI Y+ +D+    +QA    + +       +LVTA
Sbjct: 210 QSVRNLSRPITGWSIKYFSKDIFEVMMQAAVDTEVTTSEDLMRILVTA 257


>M93691-1|AAA29366.1|  574|Anopheles gambiae protein ( Anopheles
           gambiae RT2 retroposon. ).
          Length = 574

 Score = 23.4 bits (48), Expect = 8.3
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = -3

Query: 576 RNPSPRQSSRASLEYLLLPPRSAPTEAPSG 487
           RN   ++  RAS    ++PPRS    A  G
Sbjct: 225 RNQHEQEQPRASTSRAVMPPRSEALTAVRG 254


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 870,889
Number of Sequences: 2352
Number of extensions: 18180
Number of successful extensions: 306
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 305
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 306
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 84408009
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)