Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0556
         (800 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g45540.1 68415.m05663 WD-40 repeat family protein / beige-rel...    32   0.51 
At2g15880.1 68415.m01820 leucine-rich repeat family protein / ex...    29   2.7  
At1g74690.1 68414.m08650 calmodulin-binding family protein low s...    29   2.7  
At1g11160.1 68414.m01278 WD-40 repeat family protein / katanin p...    29   4.7  
At1g48960.1 68414.m05487 universal stress protein (USP) family p...    28   6.3  
At2g35890.1 68415.m04406 calcium-dependent protein kinase, putat...    28   8.3  
At2g27810.2 68415.m03372 xanthine/uracil permease family protein...    28   8.3  
At2g27810.1 68415.m03371 xanthine/uracil permease family protein...    28   8.3  
At2g23340.1 68415.m02787 AP2 domain-containing transcription fac...    28   8.3  
At1g31250.1 68414.m03825 proline-rich family protein contains pr...    28   8.3  

>At2g45540.1 68415.m05663 WD-40 repeat family protein / beige-related
            contains Pfam PF02138: Beige/BEACH domain; contains Pfam
            PF00400: WD domain, G-beta repeat (3 copies)
          Length = 2946

 Score = 31.9 bits (69), Expect = 0.51
 Identities = 16/32 (50%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = +1

Query: 388  VTGTCDAKFLIW-YH*AVTSRTCATESAEGSG 480
            VTG+ D+  L+W  H A TSRT  +E + GSG
Sbjct: 2684 VTGSRDSTVLLWRIHKAFTSRTSVSEPSTGSG 2715


>At2g15880.1 68415.m01820 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 727

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 18/57 (31%), Positives = 23/57 (40%)
 Frame = -3

Query: 642 PHRHKISP*A*DRLTREQLLFTRNPSPRQSSRASLEYLLLPPRSAPTEAPSGLTPRP 472
           P   K SP   D   +  + F R+P P Q     + +   P  S PT  P   TP P
Sbjct: 409 PQPPKESPQPNDPYNQSPVKFRRSPPPPQQPHHHVVHSPPPASSPPTSPPVHSTPSP 465


>At1g74690.1 68414.m08650 calmodulin-binding family protein low
           similarity to SF16 protein [Helianthus annuus]
           GI:560150; contains Pfam profile PF00612: IQ
           calmodulin-binding motif
          Length = 587

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 15/32 (46%), Positives = 20/32 (62%)
 Frame = -3

Query: 165 PLGTVIRSPASSFE*AGVLTHLKFENRLRSFR 70
           P  +V + PAS+FE + V T  +FE   RSFR
Sbjct: 282 PKKSVRKVPASNFESSSVQTSFEFEKPKRSFR 313


>At1g11160.1 68414.m01278 WD-40 repeat family protein / katanin p80
            subunit, putative similar to contains 6 WD-40 repeats
            (PF00400); katanin p80 subunit (GI:3005601)
            [Strongylocentrotus purpuratus]
          Length = 974

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 18/47 (38%), Positives = 24/47 (51%)
 Frame = -3

Query: 228  LGALTLRLVHPTAPVLLTKIGPLGTVIRSPASSFE*AGVLTHLKFEN 88
            LG+ T R V+ +  +LL  +   GTVIRS  S+    GV  H    N
Sbjct: 881  LGSRTERPVNVSLDMLLKLVAVFGTVIRSTVSAPRIVGVDLHANERN 927


>At1g48960.1 68414.m05487 universal stress protein (USP) family
           protein contains Pfam PF00582: universal stress protein
           family; similar to hypothetical protein GI:7770340 from
           [Arabidopsis thaliana]
          Length = 219

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = -3

Query: 552 SRASLEYLLLPPRSAPTEAPSGLTPRPFCALRRARPTR 439
           S+  +  L +P    PT+ P  L P P   L R RP R
Sbjct: 172 SQIEISGLQVPEIPTPTKVPYRLCPSPHAILWRTRPRR 209


>At2g35890.1 68415.m04406 calcium-dependent protein kinase, putative
           / CDPK, putative similar to calcium-dependent protein
           kinase, isoform AK1 (CDPK). [Arabidopsis thaliana]
           SWISS-PROT:Q06850; contains protein kinase domain,
           Pfam:PF00069; contains EF hand domain (calcium-binding
           EF-hand), Pfam:PF00036, INTERPRO:IPR002048
          Length = 520

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = +1

Query: 268 MTAGRWPWKSESAKECATTHLPKQPALKMDGAEAFC 375
           +T+  WP  SESAK+     L + P  ++   +  C
Sbjct: 351 LTSDPWPQVSESAKDLIRKMLERNPIQRLTAQQVLC 386


>At2g27810.2 68415.m03372 xanthine/uracil permease family protein
           contains Pfam profile: PF00860 permease family
          Length = 660

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = +2

Query: 224 PKKRSWDTMKGVGRS*QQDGGHGSRNPLRSVQRL 325
           P KR  D+   VGRS   DG +GS +P+R   R+
Sbjct: 114 PVKRRRDSDGVVGRSNGPDGANGSGDPVRRPGRI 147


>At2g27810.1 68415.m03371 xanthine/uracil permease family protein
           contains Pfam profile: PF00860 permease family
          Length = 709

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = +2

Query: 224 PKKRSWDTMKGVGRS*QQDGGHGSRNPLRSVQRL 325
           P KR  D+   VGRS   DG +GS +P+R   R+
Sbjct: 114 PVKRRRDSDGVVGRSNGPDGANGSGDPVRRPGRI 147


>At2g23340.1 68415.m02787 AP2 domain-containing transcription
           factor, putative 
          Length = 176

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +2

Query: 455 RRRAQKGLGVSPLGASVGADLGGSSKYSSEALED*RGEG 571
           R+ A+ G  V  LGA+V  + GG ++   E +E+ R  G
Sbjct: 109 RKAAEVGAQVDALGATVVVNTGGENRGDYEKIENCRKSG 147


>At1g31250.1 68414.m03825 proline-rich family protein contains
           proline-rich extensin domains, INTERPRO:IPR002965;
           similar to prolin rich protein GB:S44189 GI:433706 from
           [Zea mays]
          Length = 165

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 15/48 (31%), Positives = 22/48 (45%)
 Frame = -3

Query: 564 PRQSSRASLEYLLLPPRSAPTEAPSGLTPRPFCALRRARPTRYGLMIP 421
           P  +  AS    L PP ++P+  P+G TP    +L    P+     IP
Sbjct: 109 PAGTPNASPSVKLTPPYASPSVRPTGTTPNASPSLTPPNPSPSEKFIP 156


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,304,845
Number of Sequences: 28952
Number of extensions: 409871
Number of successful extensions: 1057
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1018
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1055
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1814318400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)