Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0555
(677 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U42436-10|AAF99899.1| 272|Caenorhabditis elegans Ribosomal prot... 297 3e-81
Z81053-4|CAB02879.1| 418|Caenorhabditis elegans Hypothetical pr... 30 1.7
Z78063-7|CAB01506.1| 418|Caenorhabditis elegans Hypothetical pr... 30 1.7
Z70681-3|CAA94579.2| 403|Caenorhabditis elegans Hypothetical pr... 29 4.0
AY305847-1|AAR11991.1| 461|Caenorhabditis elegans nuclear recep... 28 5.3
AF099915-4|AAC68773.2| 461|Caenorhabditis elegans Nuclear hormo... 28 5.3
Z80220-3|CAB02306.1| 601|Caenorhabditis elegans Hypothetical pr... 28 7.0
AF067948-6|AAC17701.1| 337|Caenorhabditis elegans Seven tm rece... 28 7.0
AC006794-1|AAK68504.1| 407|Caenorhabditis elegans Hypothetical ... 27 9.3
>U42436-10|AAF99899.1| 272|Caenorhabditis elegans Ribosomal
protein, small subunitprotein 2 protein.
Length = 272
Score = 297 bits (730), Expect = 3e-81
Identities = 146/193 (75%), Positives = 158/193 (81%)
Frame = -2
Query: 676 KIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDN 497
KI LE IYL SLPIKEFEIID L +L DEVLKI PVQKQT AGQRTRFKAFVAIGD+
Sbjct: 71 KITTLEEIYLNSLPIKEFEIIDA-LCSNLKDEVLKISPVQKQTTAGQRTRFKAFVAIGDH 129
Query: 496 NGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIGKPHTVPCKVTGKCGSVTV 317
GH+GLGVKCSKEVATAIRGAI+ AKL+V+PVRRGYWGNKIG PHTVPCKVTGKC SV V
Sbjct: 130 AGHVGLGVKCSKEVATAIRGAIVAAKLAVVPVRRGYWGNKIGLPHTVPCKVTGKCASVMV 189
Query: 316 RLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTGPLGNFXXXXXXXXXXXXXYLTP 137
RLIPAPRGTGIVSAPVPKKLL MAG++DCYT+A+GST LGNF YLTP
Sbjct: 190 RLIPAPRGTGIVSAPVPKKLLHMAGIEDCYTAAKGSTATLGNFAKATYAALQRTYSYLTP 249
Query: 136 DLWRDIPLTKSPY 98
DLW++ L KSPY
Sbjct: 250 DLWKEEALEKSPY 262
>Z81053-4|CAB02879.1| 418|Caenorhabditis elegans Hypothetical
protein E02A10.1 protein.
Length = 418
Score = 29.9 bits (64), Expect = 1.7
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = -2
Query: 337 KCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGST 206
+C + V PRG G+ P K+ + G++D Y GST
Sbjct: 215 ECRNTRVFAQRRPRGFGLTCHPRLIKICEAIGIKDIYVKVEGST 258
>Z78063-7|CAB01506.1| 418|Caenorhabditis elegans Hypothetical
protein E02A10.1 protein.
Length = 418
Score = 29.9 bits (64), Expect = 1.7
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = -2
Query: 337 KCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGST 206
+C + V PRG G+ P K+ + G++D Y GST
Sbjct: 215 ECRNTRVFAQRRPRGFGLTCHPRLIKICEAIGIKDIYVKVEGST 258
>Z70681-3|CAA94579.2| 403|Caenorhabditis elegans Hypothetical
protein C30F2.3 protein.
Length = 403
Score = 28.7 bits (61), Expect = 4.0
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +2
Query: 392 TSSNW*NRQLSKDNSASNGSG 454
TS+NW N QL NS + GSG
Sbjct: 309 TSTNWQNNQLGVSNSGAPGSG 329
>AY305847-1|AAR11991.1| 461|Caenorhabditis elegans nuclear receptor
NHR-121 protein.
Length = 461
Score = 28.3 bits (60), Expect = 5.3
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Frame = -1
Query: 578 SKDHACTETNTCRTAHTFQGICCHWRQQRSYWFGCE--VQQGSRHCHSRR 435
+++ CT NTCR + + IC R + G E Q R C++ R
Sbjct: 53 NRNFVCTHQNTCRVNYAMRVICRACRYHKCINMGMERSAVQPRRDCNAGR 102
>AF099915-4|AAC68773.2| 461|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 121 protein.
Length = 461
Score = 28.3 bits (60), Expect = 5.3
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Frame = -1
Query: 578 SKDHACTETNTCRTAHTFQGICCHWRQQRSYWFGCE--VQQGSRHCHSRR 435
+++ CT NTCR + + IC R + G E Q R C++ R
Sbjct: 53 NRNFVCTHQNTCRVNYAMRVICRACRYHKCINMGMERSAVQPRRDCNAGR 102
>Z80220-3|CAB02306.1| 601|Caenorhabditis elegans Hypothetical
protein T08G11.3 protein.
Length = 601
Score = 27.9 bits (59), Expect = 7.0
Identities = 19/69 (27%), Positives = 29/69 (42%)
Frame = +2
Query: 275 RRHNSSTTRGRNQPDCYRTTLAGDLARDGVWLSDLVTPVTSSNW*NRQLSKDNSASNGSG 454
R N ++T N P +T D R S L P +SSN + SK ++ +
Sbjct: 419 RNTNDTSTHSINAPFEGESTNHADFQRKQAEKSKLTRPHSSSNLLSPNASKFDATTTTRA 478
Query: 455 DFLAALHTQ 481
DF+ H +
Sbjct: 479 DFIQKPHVR 487
>AF067948-6|AAC17701.1| 337|Caenorhabditis elegans Seven tm
receptor protein 30 protein.
Length = 337
Score = 27.9 bits (59), Expect = 7.0
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = -3
Query: 264 RSFFRWLVYRTATPQLVVQLAPWEILLKPHMLPLPRHMPTSLLTC 130
R FF+ L+Y+ +P + P ++L L ++PT L+ C
Sbjct: 241 RQFFKSLIYQITSPTFTFYI-PAILILTVPFFDLKFNLPTGLIVC 284
>AC006794-1|AAK68504.1| 407|Caenorhabditis elegans Hypothetical
protein Y50D4A.3 protein.
Length = 407
Score = 27.5 bits (58), Expect = 9.3
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = -2
Query: 472 KCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIGKPHTVPCKV 344
+CS E T G ++ GY+G+ +G HT+ CK+
Sbjct: 284 ECSGEDPTNPGGPGESRRIKAFKWFNGYFGSPVGPEHTLSCKM 326
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,132,901
Number of Sequences: 27780
Number of extensions: 374506
Number of successful extensions: 1099
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 966
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1098
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1539654388
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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