Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0555
(677 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S ri... 308 2e-84
At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) simila... 307 5e-84
At1g58983.1 68414.m06666 40S ribosomal protein S2, putative simi... 307 5e-84
At1g58684.1 68414.m06657 40S ribosomal protein S2, putative 307 5e-84
At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) simila... 307 5e-84
At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C) 303 7e-83
At2g33800.1 68415.m04147 ribosomal protein S5 family protein con... 73 1e-13
At1g64880.1 68414.m07355 ribosomal protein S5 family protein con... 34 0.075
At1g72390.1 68414.m08373 expressed protein 33 0.23
At4g13310.2 68417.m02080 cytochrome P450 71A20, putative (CYP71A... 29 2.8
At4g13310.1 68417.m02081 cytochrome P450 71A20, putative (CYP71A... 29 2.8
At3g18530.1 68416.m02357 expressed protein similar to unknown pr... 29 3.7
At3g01450.1 68416.m00069 expressed protein 29 3.7
At5g59520.1 68418.m07459 zinc transporter (ZIP2) identical to zi... 28 4.9
At3g59580.1 68416.m06648 RWP-RK domain-containing protein simila... 28 6.5
At2g04050.1 68415.m00386 MATE efflux family protein similar to r... 28 6.5
At1g28210.2 68414.m03463 DNAJ heat shock protein, putative stron... 28 6.5
At1g28210.1 68414.m03462 DNAJ heat shock protein, putative stron... 28 6.5
>At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S
ribosomal protein S2 - Arabidopsis thaliana,
SWISSPROT:RS2_ARATH
Length = 276
Score = 308 bits (757), Expect = 2e-84
Identities = 139/195 (71%), Positives = 164/195 (84%)
Frame = -2
Query: 676 KIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDN 497
KI K+E IYL SLP+KE++IID +GPSL DEV+KIMPVQKQTRAGQRTRFKAF+ +GD+
Sbjct: 59 KITKIEQIYLHSLPVKEYQIIDLLVGPSLKDEVMKIMPVQKQTRAGQRTRFKAFIVVGDS 118
Query: 496 NGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIGKPHTVPCKVTGKCGSVTV 317
NGH+GLGVKCSKEVATAIRGAIILAKLSV+P+RRGYWGNKIGKPHTVPCKVTGKCGSVTV
Sbjct: 119 NGHVGLGVKCSKEVATAIRGAIILAKLSVVPIRRGYWGNKIGKPHTVPCKVTGKCGSVTV 178
Query: 316 RLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTGPLGNFXXXXXXXXXXXXXYLTP 137
R++PAPRG+GIV+A VPKK+LQ AG+ D +TS+RGST LGNF +LTP
Sbjct: 179 RMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLQKTYGFLTP 238
Query: 136 DLWRDIPLTKSPYSE 92
+ W++ +KSPY E
Sbjct: 239 EFWKETRFSKSPYQE 253
>At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) similar
to ribosomal protein S2 GI:430711 from [Drosophila
melanogaster]
Length = 284
Score = 307 bits (753), Expect = 5e-84
Identities = 140/195 (71%), Positives = 163/195 (83%)
Frame = -2
Query: 676 KIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDN 497
KI KLE IYL SLP+KE++IID +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD
Sbjct: 67 KITKLEQIYLHSLPVKEYQIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDG 126
Query: 496 NGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIGKPHTVPCKVTGKCGSVTV 317
NGH+GLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGNKIGKPHTVPCKVTGKCGSVTV
Sbjct: 127 NGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCKVTGKCGSVTV 186
Query: 316 RLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTGPLGNFXXXXXXXXXXXXXYLTP 137
R++PAPRG+GIV+A VPKK+LQ AG+ D +TS+RGST LGNF +LTP
Sbjct: 187 RMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLQKTYGFLTP 246
Query: 136 DLWRDIPLTKSPYSE 92
+ W++ ++SPY E
Sbjct: 247 EFWKETRFSRSPYQE 261
>At1g58983.1 68414.m06666 40S ribosomal protein S2, putative similar
to ribosomal protein S2 GI:939717 from [Urechis caupo]
Length = 284
Score = 307 bits (753), Expect = 5e-84
Identities = 140/195 (71%), Positives = 163/195 (83%)
Frame = -2
Query: 676 KIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDN 497
KI KLE IYL SLP+KE++IID +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD
Sbjct: 67 KITKLEQIYLHSLPVKEYQIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDG 126
Query: 496 NGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIGKPHTVPCKVTGKCGSVTV 317
NGH+GLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGNKIGKPHTVPCKVTGKCGSVTV
Sbjct: 127 NGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCKVTGKCGSVTV 186
Query: 316 RLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTGPLGNFXXXXXXXXXXXXXYLTP 137
R++PAPRG+GIV+A VPKK+LQ AG+ D +TS+RGST LGNF +LTP
Sbjct: 187 RMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLQKTYGFLTP 246
Query: 136 DLWRDIPLTKSPYSE 92
+ W++ ++SPY E
Sbjct: 247 EFWKETRFSRSPYQE 261
>At1g58684.1 68414.m06657 40S ribosomal protein S2, putative
Length = 284
Score = 307 bits (753), Expect = 5e-84
Identities = 140/195 (71%), Positives = 163/195 (83%)
Frame = -2
Query: 676 KIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDN 497
KI KLE IYL SLP+KE++IID +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD
Sbjct: 67 KITKLEQIYLHSLPVKEYQIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDG 126
Query: 496 NGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIGKPHTVPCKVTGKCGSVTV 317
NGH+GLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGNKIGKPHTVPCKVTGKCGSVTV
Sbjct: 127 NGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCKVTGKCGSVTV 186
Query: 316 RLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTGPLGNFXXXXXXXXXXXXXYLTP 137
R++PAPRG+GIV+A VPKK+LQ AG+ D +TS+RGST LGNF +LTP
Sbjct: 187 RMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLQKTYGFLTP 246
Query: 136 DLWRDIPLTKSPYSE 92
+ W++ ++SPY E
Sbjct: 247 EFWKETRFSRSPYQE 261
>At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) similar
to ribosomal protein S2 GI:939717 from (Urechis caupo)
Length = 284
Score = 307 bits (753), Expect = 5e-84
Identities = 140/195 (71%), Positives = 163/195 (83%)
Frame = -2
Query: 676 KIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDN 497
KI KLE IYL SLP+KE++IID +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD
Sbjct: 67 KITKLEQIYLHSLPVKEYQIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDG 126
Query: 496 NGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIGKPHTVPCKVTGKCGSVTV 317
NGH+GLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGNKIGKPHTVPCKVTGKCGSVTV
Sbjct: 127 NGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCKVTGKCGSVTV 186
Query: 316 RLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTGPLGNFXXXXXXXXXXXXXYLTP 137
R++PAPRG+GIV+A VPKK+LQ AG+ D +TS+RGST LGNF +LTP
Sbjct: 187 RMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLQKTYGFLTP 246
Query: 136 DLWRDIPLTKSPYSE 92
+ W++ ++SPY E
Sbjct: 247 EFWKETRFSRSPYQE 261
>At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C)
Length = 285
Score = 303 bits (744), Expect = 7e-83
Identities = 137/194 (70%), Positives = 162/194 (83%)
Frame = -2
Query: 673 IDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNN 494
I ++E IYL SLP+KE++IID +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD N
Sbjct: 69 IKQIEQIYLHSLPVKEYQIIDMLIGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGN 128
Query: 493 GHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVR 314
GH+GLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGNKIGKPHTVPCKVTGKCGSVTVR
Sbjct: 129 GHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVR 188
Query: 313 LIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTGPLGNFXXXXXXXXXXXXXYLTPD 134
++PAPRG+GIV+A VPKK+LQ AG+ D +TS+RGST LGNF +LTP+
Sbjct: 189 MVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLQKTYGFLTPE 248
Query: 133 LWRDIPLTKSPYSE 92
W++ ++SPY E
Sbjct: 249 FWKETRFSRSPYQE 262
>At2g33800.1 68415.m04147 ribosomal protein S5 family protein
contains Pfam profiles PF03719: Ribosomal protein S5,
C-terminal domain, PF00333: Ribosomal protein S5,
N-terminal domain
Length = 303
Score = 73.3 bits (172), Expect = 1e-13
Identities = 40/132 (30%), Positives = 72/132 (54%)
Frame = -2
Query: 586 DEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVL 407
+ V+++ V K + G++ +F+A V +GD G++G+G +KEV A++ + I A+ +++
Sbjct: 149 ERVVQVRRVTKVVKGGKQLKFRAIVVVGDKQGNVGVGCAKAKEVVAAVQKSAIDARRNIV 208
Query: 406 PVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCY 227
V + K T P + G G+ V L PA GTG+++ + +L+MAGV++
Sbjct: 209 QV-------PMTKYSTFPHRSEGDYGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENAL 261
Query: 226 TSARGSTGPLGN 191
GS L N
Sbjct: 262 GKQLGSNNALNN 273
>At1g64880.1 68414.m07355 ribosomal protein S5 family protein
contains similarity to 30S ribosomal protein S5
GI:6969105 from [Campylobacter jejuni]
Length = 515
Score = 34.3 bits (75), Expect = 0.075
Identities = 30/124 (24%), Positives = 55/124 (44%)
Frame = -2
Query: 580 VLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPV 401
V+ + V K T+ G+ R+ A + G+ G IG ++ +A++ A ++ V
Sbjct: 362 VIDVKKVCKVTKGGRVERYTALMVCGNYEGIIGYAKAKAETGQSAMQKAYEKCFQNLHYV 421
Query: 400 RRGYWGNKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTS 221
R + HT+ + + L PAP TG+ + V K +L +AG ++ +
Sbjct: 422 ERH-------EEHTIAHAIQTSYKKTKLYLWPAPTTTGMKAGRVVKTILLLAGFKNIKSK 474
Query: 220 ARGS 209
GS
Sbjct: 475 VIGS 478
>At1g72390.1 68414.m08373 expressed protein
Length = 1088
Score = 32.7 bits (71), Expect = 0.23
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Frame = +1
Query: 151 HMSWQWQHMWL*QNFPRGQLNHELRCSSPVHQPSEE-AS*ELAQTQFQYHEGQESAGLLQ 327
+M+ Q Q L Q + QL H+ + P+ QPS++ A Q Q Q HE + A Q
Sbjct: 920 YMNQQQQQQQLQQQPQQQQLQHQQQLQQPMSQPSQQLAQSPQQQQQLQQHEQPQQAQQQQ 979
Query: 328 NHT 336
T
Sbjct: 980 QAT 982
>At4g13310.2 68417.m02080 cytochrome P450 71A20, putative (CYP71A20)
Identical to Cytochrome P450 (SP:Q9T0K2) [Arabidopsis
thaliana]; similar to cytochrome P450 71A4, Solanum
melongena, PIR2:S36805
Length = 390
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/56 (25%), Positives = 28/56 (50%)
Frame = -3
Query: 306 LPLVVLELCLRQFLRSFFRWLVYRTATPQLVVQLAPWEILLKPHMLPLPRHMPTSL 139
+ ++++ LCL L + ++ RTAT + +PW + + ++ L H SL
Sbjct: 1 MEMILITLCLTTLLALLLKSILKRTATKNFNLPPSPWRLPVIGNLHQLSLHTHRSL 56
>At4g13310.1 68417.m02081 cytochrome P450 71A20, putative (CYP71A20)
Identical to Cytochrome P450 (SP:Q9T0K2) [Arabidopsis
thaliana]; similar to cytochrome P450 71A4, Solanum
melongena, PIR2:S36805
Length = 497
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/56 (25%), Positives = 28/56 (50%)
Frame = -3
Query: 306 LPLVVLELCLRQFLRSFFRWLVYRTATPQLVVQLAPWEILLKPHMLPLPRHMPTSL 139
+ ++++ LCL L + ++ RTAT + +PW + + ++ L H SL
Sbjct: 1 MEMILITLCLTTLLALLLKSILKRTATKNFNLPPSPWRLPVIGNLHQLSLHTHRSL 56
>At3g18530.1 68416.m02357 expressed protein similar to unknown
protein GB:AAF24615 from [Arabidopsis thaliana]
Length = 297
Score = 28.7 bits (61), Expect = 3.7
Identities = 22/72 (30%), Positives = 32/72 (44%)
Frame = +3
Query: 378 LLPQ*PLRTGKTDNLARIIAPRMAVATSLLHFTPKPI*PLLSPMATNALKRVRCPARVCF 557
LL Q L++ + A R VA + H +P + P L P N R+R A CF
Sbjct: 166 LLTQLLLKSSQDKRFVCEAAERALVAMTT-HVSPALLLPKLRPCLKNKSPRIRAKASACF 224
Query: 558 CTGMIFRTSSFR 593
+G + R + R
Sbjct: 225 -SGCVPRLEAAR 235
>At3g01450.1 68416.m00069 expressed protein
Length = 326
Score = 28.7 bits (61), Expect = 3.7
Identities = 19/67 (28%), Positives = 29/67 (43%)
Frame = +3
Query: 357 TVCGFPILLPQ*PLRTGKTDNLARIIAPRMAVATSLLHFTPKPI*PLLSPMATNALKRVR 536
T+ +LL Q L++ + A + VA + H +P + P L P N R+R
Sbjct: 159 TIDQLDLLLTQLLLKSSQDKRFVCEAAEKALVAMTA-HVSPALLLPKLQPFLKNRNPRIR 217
Query: 537 CPARVCF 557
A CF
Sbjct: 218 AKASTCF 224
>At5g59520.1 68418.m07459 zinc transporter (ZIP2) identical to zinc
transporter ZIP2 [Arabidopsis thaliana]
gi|3252868|gb|AAC24198; member of the Zinc (Zn2+)-Iron
(Fe2+) permease (ZIP) family, PMID:11500563
Length = 353
Score = 28.3 bits (60), Expect = 4.9
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = -2
Query: 520 AFVAIGDNNGHIGLGVKCSKE 458
AFVA G NN H+G V S+E
Sbjct: 149 AFVAAGSNNNHVGASVGESRE 169
>At3g59580.1 68416.m06648 RWP-RK domain-containing protein similar
to nodule inception protein [Lotus japonicus]
GI:6448579; contains Pfam profile: PF02042 RWP-RK domain
Length = 894
Score = 27.9 bits (59), Expect = 6.5
Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 3/68 (4%)
Frame = +2
Query: 161 GNGSICGFSKISQGAS*TTS*GVAVLYTSHLKKLLRNW---RRHNSSTTRGRNQPDCYRT 331
GNG++ IS S +++ AVL S L +NW R HN+S G + +
Sbjct: 738 GNGTVEPNHSISSSMSDSSNSSGAVLLGSSSASLEQNWNQIRTHNNSGESGSSSTLTVKA 797
Query: 332 TLAGDLAR 355
T D R
Sbjct: 798 TYREDTVR 805
>At2g04050.1 68415.m00386 MATE efflux family protein similar to
ripening regulated protein DDTFR18 [Lycopersicon
esculentum] GI:12231296; contains Pfam profile: PF01554
uncharacterized membrane protein family
Length = 476
Score = 27.9 bits (59), Expect = 6.5
Identities = 12/18 (66%), Positives = 12/18 (66%)
Frame = -2
Query: 364 HTVPCKVTGKCGSVTVRL 311
H VPCK T K G VTV L
Sbjct: 11 HLVPCKDTWKSGQVTVEL 28
>At1g28210.2 68414.m03463 DNAJ heat shock protein, putative strong
similarity to mitochondrial DnaJ protein (AtJ1)
GI:564030 from [Arabidopsis thaliana]; contains Pfam
profiles PF00226: DnaJ domain, PF01556: DnaJ C terminal
region, PF00684: DnaJ central domain (4 repeats);
identical to cDNA DnaJ homolog AtJ1 (atj) GI:564029
Length = 427
Score = 27.9 bits (59), Expect = 6.5
Identities = 18/63 (28%), Positives = 27/63 (42%)
Frame = -2
Query: 424 AKLSVLPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMA 245
A +S+ P RG G P T C+ G + + RG+GIV +L+
Sbjct: 198 AAMSICPTCRGV-GRVTIPPFTASCQTCKGTGHIIKEYCMSCRGSGIVEGTKTAELVIPG 256
Query: 244 GVQ 236
GV+
Sbjct: 257 GVE 259
>At1g28210.1 68414.m03462 DNAJ heat shock protein, putative strong
similarity to mitochondrial DnaJ protein (AtJ1)
GI:564030 from [Arabidopsis thaliana]; contains Pfam
profiles PF00226: DnaJ domain, PF01556: DnaJ C terminal
region, PF00684: DnaJ central domain (4 repeats);
identical to cDNA DnaJ homolog AtJ1 (atj) GI:564029
Length = 408
Score = 27.9 bits (59), Expect = 6.5
Identities = 18/63 (28%), Positives = 27/63 (42%)
Frame = -2
Query: 424 AKLSVLPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMA 245
A +S+ P RG G P T C+ G + + RG+GIV +L+
Sbjct: 198 AAMSICPTCRGV-GRVTIPPFTASCQTCKGTGHIIKEYCMSCRGSGIVEGTKTAELVIPG 256
Query: 244 GVQ 236
GV+
Sbjct: 257 GVE 259
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,314,527
Number of Sequences: 28952
Number of extensions: 354806
Number of successful extensions: 909
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 890
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 908
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1428369392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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