Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0554
         (696 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2G2.01c |liz1|SPBC4B4.13c|pantothenate transporter |Schizosa...    27   1.9  
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch...    27   1.9  
SPCC1235.07 |fta7|sma7, cnl3|Sim4 and Mal2 associated |Schizosac...    27   2.6  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    27   3.4  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    25   7.8  
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos...    25   7.8  

>SPBC2G2.01c |liz1|SPBC4B4.13c|pantothenate transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 514

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +3

Query: 324 LLPIDFWFVTVFTSVRYFKNYLD 392
           L+ ID WF+  +  V YF NYLD
Sbjct: 25  LIKID-WFILSYCCVSYFINYLD 46


>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 481

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +3

Query: 57  TEPIKFSNKKKNQSVSEKERKKL 125
           T  +KF NK    S+ EKE KKL
Sbjct: 8   TTNVKFKNKVPQPSIKEKEAKKL 30


>SPCC1235.07 |fta7|sma7, cnl3|Sim4 and Mal2 associated
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 244

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = -3

Query: 433 SKTALVHFNKTIQKSK*FLK*RTEVKTVTNQKSIG 329
           +KT  +H NKT+Q S+   K    ++ + N K+IG
Sbjct: 198 TKTMQIHANKTVQLSQTIQKATLLLQRLNNTKNIG 232


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
 Frame = +3

Query: 24   VLLVEAISNYDTEPIKFSNKKK-NQSVSEKERKKLLRVIDFFKLIY*VIVILFICVNIKK 200
            VLL      ++T  + +S  +  N+ V E  R+  L +  F      V+V+    +++KK
Sbjct: 3682 VLLKNLKEKHETIRLAYSESQSINRKVDELIRRYKLSIKSFLS----VVVVFQHFISLKK 3737

Query: 201  SFDFLFFLALST 236
            S+ F F    ST
Sbjct: 3738 SYSFSFNFIWST 3749


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = +3

Query: 72   FSNKKKNQSVSEKERKKLLRVIDFFK 149
            +SN+++ Q+V E  R+ L  V+ F+K
Sbjct: 1676 YSNEQQTQAVDEIRREVLTSVLKFYK 1701


>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
            Rad50|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1290

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +2

Query: 218  LLSSVYVFCASCRLLGVNKSIAVLSAPTTRLFE 316
            +L+ + +  A    LGVN  I  L  PTT L E
Sbjct: 1188 VLACIIIRLALAECLGVNCGILALDEPTTNLDE 1220


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,288,032
Number of Sequences: 5004
Number of extensions: 40353
Number of successful extensions: 97
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)