Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0554
         (696 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0190 + 12448027-12450825                                         29   3.5  
10_07_0098 - 12844631-12845074,12845329-12846570                       28   8.1  

>04_03_0190 + 12448027-12450825
          Length = 932

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -2

Query: 533 LKINDAHKKNHCRLHCRISNVLY*ICQS 450
           +K N+  +  HCR+HC +  V   +C+S
Sbjct: 493 MKRNENGRVKHCRMHCIVREVTISLCKS 520


>10_07_0098 - 12844631-12845074,12845329-12846570
          Length = 561

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 14/35 (40%), Positives = 23/35 (65%)
 Frame = -3

Query: 511 KKTIVDYIVEFQMYFIRFVNQKETLLSKTALVHFN 407
           KK +VDY+V+F+   + FV     +L  +AL++FN
Sbjct: 14  KKVLVDYLVKFRWILVIFV-----VLPISALIYFN 43


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,454,750
Number of Sequences: 37544
Number of extensions: 187580
Number of successful extensions: 371
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 364
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 369
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)