Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0554
         (696 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    23   2.1  
DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex det...    23   2.8  
DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex det...    23   2.8  
DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex det...    23   2.8  
DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex det...    23   2.8  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    22   4.8  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   6.4  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   6.4  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   6.4  

>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 10/17 (58%), Positives = 14/17 (82%), Gaps = 2/17 (11%)
 Frame = +2

Query: 455 DKSNK--VHLKFYNVIY 499
           D++NK  V L+FYNV+Y
Sbjct: 547 DEANKKGVSLRFYNVVY 563


>DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -2

Query: 188 YANK*NNDYLINQFKKINY 132
           Y N  NN+Y  N +KK+ Y
Sbjct: 94  YNNYNNNNYNNNNYKKLQY 112


>DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -2

Query: 188 YANK*NNDYLINQFKKINY 132
           Y N  NN+Y  N +KK+ Y
Sbjct: 94  YNNYNNNNYNNNNYKKLQY 112


>DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -2

Query: 188 YANK*NNDYLINQFKKINY 132
           Y N  NN+Y  N +KK+ Y
Sbjct: 94  YNNYNNNNYNNNNYKKLQY 112


>DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -2

Query: 188 YANK*NNDYLINQFKKINY 132
           Y N  NN+Y  N +KK+ Y
Sbjct: 94  YNNYNNNNYNNNNYKKLQY 112


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = -2

Query: 527 INDAHKKNHCRLHCR 483
           +    +KN+C LHC+
Sbjct: 338 VEPPRRKNNCPLHCK 352


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +3

Query: 69  KFSNKKKNQSVSEKERK 119
           K S KK+ +S ++KERK
Sbjct: 600 KASKKKREKSSAKKERK 616


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +2

Query: 155  LLSNRYSIYLRKHKKI 202
            L  N Y +YL  H KI
Sbjct: 1466 LCGNTYQLYLTSHNKI 1481


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +2

Query: 155  LLSNRYSIYLRKHKKI 202
            L  N Y +YL  H KI
Sbjct: 1462 LCGNTYQLYLTSHNKI 1477


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,882
Number of Sequences: 438
Number of extensions: 3082
Number of successful extensions: 14
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21317625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)