Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0553
         (609 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g63780.1 68418.m08005 zinc finger (C3HC4-type RING finger) fa...    36   0.028
At5g08750.1 68418.m01039 zinc finger (C3HC4-type RING finger) fa...    36   0.028
At1g30550.1 68414.m03737 expressed protein similar to PIMT (GI:1...    28   5.6  
At4g21000.1 68417.m03039 carbonic anhydrase family protein simil...    27   9.7  

>At5g63780.1 68418.m08005 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 367

 Score = 35.5 bits (78), Expect = 0.028
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +2

Query: 176 FFSFLAKMNLFYKS*RYWNIIFYFWYLIRNNW 271
           FF F+    + Y   RYW I+F FW+L+   W
Sbjct: 325 FFRFVVLTRIRYGPARYWAILFIFWFLVFGIW 356


>At5g08750.1 68418.m01039 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 363

 Score = 35.5 bits (78), Expect = 0.028
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +2

Query: 176 FFSFLAKMNLFYKS*RYWNIIFYFWYLIRNNW 271
           FF F+    + Y   RYW I+F FW+L+   W
Sbjct: 321 FFRFVVLTRIRYGPARYWAILFVFWFLVFGIW 352


>At1g30550.1 68414.m03737 expressed protein similar to PIMT
           (GI:15127914) [Mus musculus]; similar to hypothetical
           protein GB:AAF19758 GI:6634778 from [Arabidopsis
           thaliana]
          Length = 391

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 16/42 (38%), Positives = 25/42 (59%)
 Frame = -3

Query: 532 ILLEINNIREGGRSQNLILFIRGNAISGAPSIRGTNQFPNPP 407
           I L +NN +  G + N I F+ G+ +  APS++G   F +PP
Sbjct: 82  IALAMNNAKVYGVA-NRIDFVTGDFMQLAPSLKGDVLFLSPP 122


>At4g21000.1 68417.m03039 carbonic anhydrase family protein similar
           to storage protein (dioscorin) [Dioscorea cayenensis]
           GI:433463; contains Pfam profile PF00194:
           Eukaryotic-type carbonic anhydrase
          Length = 260

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -1

Query: 288 KVLKMFQLFLIKYQK*NIMFQYLYDL*NKFIFAKKEKK*NG 166
           K +  F +F I     NI+F Y  ++ NK +F  K+K   G
Sbjct: 6   KTILFFVVFFIDLFSPNILFVYAREIGNKPLFTYKQKTEKG 46


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,801,609
Number of Sequences: 28952
Number of extensions: 162990
Number of successful extensions: 263
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 261
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 263
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1216725696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)