Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0551
         (727 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    22   4.4  
AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein p...    22   4.4  
AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.         21   7.7  

>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 11/42 (26%), Positives = 22/42 (52%)
 Frame = -1

Query: 139 YNLRSVSQLPEGMSTHEYVEKKAGIDPGGVTTDPPPVRPSSN 14
           +NL SV Q    + T+++++ K  +    V   PP   P+++
Sbjct: 182 HNLSSVPQPQPVLPTYKWMQVKRNVPKPTVPKIPPAEFPTTS 223


>AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein
           protein.
          Length = 253

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 11/42 (26%), Positives = 22/42 (52%)
 Frame = -1

Query: 139 YNLRSVSQLPEGMSTHEYVEKKAGIDPGGVTTDPPPVRPSSN 14
           +NL SV Q    + T+++++ K  +    V   PP   P+++
Sbjct: 182 HNLSSVPQPQPVLPTYKWMQVKRNVPKPTVPKIPPAEFPTTS 223


>AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.
          Length = 247

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
 Frame = -2

Query: 291 RQLEKTSISLKISSAQ--SDNSEGTLTETALP 202
           R LEKTS  LKI  A+  +  ++  L   +LP
Sbjct: 169 RALEKTSEELKIPKAKINTGKTQYNLNSKSLP 200


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,122
Number of Sequences: 336
Number of extensions: 3616
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19363530
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)