Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0551
         (727 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolo...    27   2.1  
SPCPB16A4.03c |ade10||IMP cyclohydrolase|Schizosaccharomyces pom...    26   4.8  
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma...    26   4.8  
SPCC1529.01 ||SPCC794.14|membrane transporter|Schizosaccharomyce...    26   4.8  
SPBC29A10.09c |||CAF1 family ribonuclease|Schizosaccharomyces po...    25   8.3  
SPAP27G11.08c |meu32|mug11|sequence orphan|Schizosaccharomyces p...    25   8.3  

>SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolog
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 925

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 13/34 (38%), Positives = 22/34 (64%)
 Frame = +3

Query: 150 PPTFYSEDLRVNAWNLSTVARSPSMFLRSCPIVL 251
           PP  Y+E L ++++++S V RSP  F    P++L
Sbjct: 518 PPMSYAEFLIISSFHISAVKRSP--FSSLSPVIL 549


>SPCPB16A4.03c |ade10||IMP cyclohydrolase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 585

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = +2

Query: 161 LLGRPTRKRMELVHGSAVSVNVPSELSDCAELILSEIDV 277
           +LG   +     VHG  ++ ++PS+  D  E  + +ID+
Sbjct: 56  ILGGRVKTLHPAVHGGILARDIPSDEKDLVEQSIEKIDI 94


>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1000

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -2

Query: 327 ELIRDRFFP*VVRQLEKTSISLKISSAQSDNSEGTLTE 214
           +LIR +    +   +   SI   +SS  SDN EG+ T+
Sbjct: 423 KLIRSKLSESIESGINTISIEENVSSTNSDNLEGSTTD 460


>SPCC1529.01 ||SPCC794.14|membrane transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 462

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 17/56 (30%), Positives = 29/56 (51%)
 Frame = +1

Query: 319 DQLPIKYKLILSNE*NVIES*LYIYFFVFDVNALSIAPIIEVTSAMNFCQLFNVLY 486
           DQ+  ++ +  S E  +I   L IY  VF ++ +  AP+ EV       Q+ NV++
Sbjct: 70  DQIADRFHIQNSTEKALI---LSIYLLVFAISPMISAPLSEVFGRRMLLQVGNVIF 122


>SPBC29A10.09c |||CAF1 family ribonuclease|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 427

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = -2

Query: 525 LFIY*VAPTK*SSIQNIEQLTKVHGR-CHLNYRCN 424
           LF+Y V  TK S IQ  + +  +HG    LN  C+
Sbjct: 393 LFVYYVMRTKHSDIQRWQNVLPIHGSFLDLNKYCS 427


>SPAP27G11.08c |meu32|mug11|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 392

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = -2

Query: 510 VAPTK*SSIQNIEQLTKVHGRCHLNYRCNRQCINIKNKKIYI 385
           +APT+  S+ N EQ   +H      YR  R C+   NK+IY+
Sbjct: 343 IAPTE-LSVLNEEQA--MHLENVFLYRHYRVCVGFLNKQIYV 381


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,977,536
Number of Sequences: 5004
Number of extensions: 60361
Number of successful extensions: 129
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)