Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0551
         (727 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0615 - 22761375-22761760,22762218-22765026                       31   0.93 
01_07_0064 + 40834649-40834786,40834934-40834997,40835333-408353...    31   1.2  
04_03_0010 - 9318031-9318275,9318364-9319123,9319528-9319845,931...    29   3.8  
02_01_0782 + 5827364-5827441,5827733-5827787,5828761-5828849,582...    29   5.0  
08_02_1448 - 27168389-27172021                                         28   8.7  
08_01_0050 + 350768-351214,352597-352717,352944-353118,353225-35...    28   8.7  

>06_03_0615 - 22761375-22761760,22762218-22765026
          Length = 1064

 Score = 31.1 bits (67), Expect = 0.93
 Identities = 16/44 (36%), Positives = 27/44 (61%)
 Frame = +2

Query: 140 LT*PTYVLLGRPTRKRMELVHGSAVSVNVPSELSDCAELILSEI 271
           LT P    LGR  +    L+ G+A+S  +P ELS+C+ L++ ++
Sbjct: 276 LTGPIPPELGRLQKLTSLLLWGNALSGRIPPELSNCSALVVLDL 319


>01_07_0064 +
           40834649-40834786,40834934-40834997,40835333-40835391,
           40835602-40835677,40835775-40835846,40837641-40837728,
           40838239-40838497,40838766-40839000,40839447-40839470,
           40839910-40839997,40840110-40840300,40841082-40841322,
           40841803-40842556
          Length = 762

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 29/89 (32%), Positives = 38/89 (42%), Gaps = 5/89 (5%)
 Frame = -1

Query: 253 FSTIGQLRRNIDGDRATVDKFHAFTRRSSE*NVG-----GLG*YNLRSVSQLPEGMSTHE 89
           F    Q+ +NI G R       +FT+  SE   G     G+  Y    V+  P G  T +
Sbjct: 266 FGDYPQVMKNIVGSRLP-----SFTKAQSEDVKGSLDFIGMNHYYSLYVNDRPLGKGTRD 320

Query: 88  YVEKKAGIDPGGVTTDPPPVRPSSNMRIH 2
           +V     I   G  TDPPP   SSN  +H
Sbjct: 321 FVAD-ISIYYRGSKTDPPPGYGSSNDTVH 348


>04_03_0010 -
           9318031-9318275,9318364-9319123,9319528-9319845,
           9319921-9320229,9320594-9321013
          Length = 683

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 14/49 (28%), Positives = 24/49 (48%)
 Frame = -1

Query: 160 NVGGLG*YNLRSVSQLPEGMSTHEYVEKKAGIDPGGVTTDPPPVRPSSN 14
           +VGG G   ++S+   P  +S H Y      +  G +TT+  P++   N
Sbjct: 282 DVGGAG---VQSLDDTPVDISLHRYTTNNKSVKRGCITTENSPLKKVKN 327


>02_01_0782 +
           5827364-5827441,5827733-5827787,5828761-5828849,
           5829167-5829191,5829645-5829683,5830316-5830433,
           5830857-5831023,5831155-5831518,5831589-5831701,
           5832185-5832310,5832436-5833339,5833694-5834036
          Length = 806

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = +2

Query: 158 VLLGRPTRKRMELV--HGSAVSVNVPSELSDCAELI 259
           ++LG    KR+E V  HG+  +  VP  + DC EL+
Sbjct: 143 LILGNDVLKRIEYVDVHGAGSTPVVPVRIVDCGELV 178


>08_02_1448 - 27168389-27172021
          Length = 1210

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +1

Query: 91   HVYSCLLVVETPTSSCTNLAHLR 159
            H++ CL +V  PT   T+L HLR
Sbjct: 1018 HIHMCLSLVCWPTEELTSLIHLR 1040


>08_01_0050 +
           350768-351214,352597-352717,352944-353118,353225-353295,
           353575-354209
          Length = 482

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = -2

Query: 288 QLEKTSISLKISSAQSDNSEGTLTETALPWTSSMRLR 178
           ++EK  + ++ S    D+S+     +ALP  S +R+R
Sbjct: 374 RMEKVKVPIRFSRGADDHSDDKYDRSALPKISDVRIR 410


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,116,034
Number of Sequences: 37544
Number of extensions: 376629
Number of successful extensions: 845
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 811
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 845
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)