Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0551
         (727 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11872| Best HMM Match : C1_2 (HMM E-Value=5.5)                      30   1.7  
SB_37971| Best HMM Match : 7tm_1 (HMM E-Value=1.9e-20)                 29   3.8  
SB_56508| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.7  
SB_55637| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.7  
SB_52056| Best HMM Match : DENN (HMM E-Value=8.8)                      28   6.7  
SB_50439| Best HMM Match : rve (HMM E-Value=4.1e-19)                   28   6.7  
SB_41405| Best HMM Match : RVT_1 (HMM E-Value=0)                       28   6.7  

>SB_11872| Best HMM Match : C1_2 (HMM E-Value=5.5)
          Length = 425

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +3

Query: 24  GLTGGGSVVTPPGSIPAFFSTYSCVLMPSGS 116
           G T G ++ +P    P F S Y C+L P GS
Sbjct: 194 GSTIGKNISSPVKKPPGFISMYRCILTPPGS 224


>SB_37971| Best HMM Match : 7tm_1 (HMM E-Value=1.9e-20)
          Length = 466

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +3

Query: 162 YSEDLRVNAWNLSTVARSPSMFL 230
           Y+ED+ VN W L+   RSP + L
Sbjct: 124 YAEDIIVNEWTLNLARRSPDIIL 146


>SB_56508| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 350

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = -1

Query: 121 SQLPEGMSTHEYVEKKAGIDP-GGVTTDPPP 32
           ++LP+G+++ + V K   + P GG T  PPP
Sbjct: 33  AKLPKGLASIDRVRKWVSLQPVGGYTQTPPP 63


>SB_55637| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 87

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = -1

Query: 547 TYRSFHLFIYLLSCTNQV 494
           T  +FH+FIYLL CT Q+
Sbjct: 9   TAGTFHVFIYLLHCTIQI 26


>SB_52056| Best HMM Match : DENN (HMM E-Value=8.8)
          Length = 152

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -1

Query: 121 SQLPEGMSTHEYVEKKAGIDPGGVTTDPPPV 29
           S+ PE +    YV+ + G+D  G TT+P  +
Sbjct: 115 SECPEKLDITNYVKARLGLDEEGRTTEPDDI 145


>SB_50439| Best HMM Match : rve (HMM E-Value=4.1e-19)
          Length = 254

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = -1

Query: 121 SQLPEGMSTHEYVEKKAGIDP-GGVTTDPPP 32
           ++LP+G+++ + V K   + P GG T  PPP
Sbjct: 33  AKLPKGLASIDRVRKWVSLQPVGGYTQTPPP 63


>SB_41405| Best HMM Match : RVT_1 (HMM E-Value=0)
          Length = 2639

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = -1

Query: 139  YNLRSVSQLPEGMSTHEYVEKKAGIDPGGVTTDPPPVRPSSNMRIH 2
            + LR+ +  P  ++ H     K   DP    T PPPV P   + +H
Sbjct: 1499 FRLRTTTNRPVSVTVHAN-RMKPYYDPADRPTLPPPVIPEDTLPLH 1543


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,364,746
Number of Sequences: 59808
Number of extensions: 439151
Number of successful extensions: 996
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 913
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 996
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1937927537
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)