Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0551
         (727 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g04060.1 68415.m00387 beta-galactosidase, putative / lactase,...    28   7.2  
At1g34110.1 68414.m04230 leucine-rich repeat transmembrane prote...    28   7.2  
At3g13380.1 68416.m01683 leucine-rich repeat family protein / pr...    27   9.6  

>At2g04060.1 68415.m00387 beta-galactosidase, putative / lactase,
           putative similar to beta-galactosidase precursor
           SP:P49676 from [Brassica oleracea]
          Length = 469

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 11/15 (73%), Positives = 12/15 (80%)
 Frame = -2

Query: 558 LDVSLIDPFIYLFIY 514
           L +  IDPFIYLFIY
Sbjct: 437 LSIKPIDPFIYLFIY 451


>At1g34110.1 68414.m04230 leucine-rich repeat transmembrane protein
           kinase, putative contains similarity to receptor protein
           kinase-like protein GI:10177178 from [Arabidopsis
           thaliana]
          Length = 1045

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 15/44 (34%), Positives = 28/44 (63%)
 Frame = +2

Query: 164 LGRPTRKRMELVHGSAVSVNVPSELSDCAELILSEIDVFSNCLT 295
           LG+  +    L+ G+++S  +P E+S+C+ L++   DV +N LT
Sbjct: 261 LGKLQKITSLLLWGNSLSGVIPPEISNCSSLVV--FDVSANDLT 302


>At3g13380.1 68416.m01683 leucine-rich repeat family protein /
           protein kinase family protein contains Pfam domains
           PF00560: Leucine Rich Repeat and PF00069: Protein kinase
           domain
          Length = 1164

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 21/70 (30%), Positives = 36/70 (51%)
 Frame = +2

Query: 86  ILMCTHAFW*LRHRPQVVLT*PTYVLLGRPTRKRMELVHGSAVSVNVPSELSDCAELILS 265
           I  CT+  W        +LT    V +G+  +  +  +  ++++ N+PSEL +C  LI  
Sbjct: 495 ISKCTNMLW--ISLSSNLLTGEIPVGIGKLEKLAILQLGNNSLTGNIPSELGNCKNLIW- 551

Query: 266 EIDVFSNCLT 295
            +D+ SN LT
Sbjct: 552 -LDLNSNNLT 560


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,355,701
Number of Sequences: 28952
Number of extensions: 304357
Number of successful extensions: 697
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 669
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 697
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1584903024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)