Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0550
(783 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0459 + 3298780-3298788,3298900-3299037,3299174-3299207,329... 32 0.45
09_04_0192 + 15478270-15480257,15480358-15480640,15480727-15481116 30 2.4
12_02_0660 + 21636604-21636822 29 4.2
11_01_0553 - 4368233-4368320,4368427-4368514,4368595-4368668,436... 29 4.2
06_02_0036 - 10844876-10846173,10846490-10847012 29 5.5
08_01_1072 + 10954080-10954851,10954956-10955027,10955108-109551... 28 7.3
10_08_0495 - 18318028-18320399,18322450-18322981,18323097-183232... 28 9.6
>02_01_0459 +
3298780-3298788,3298900-3299037,3299174-3299207,
3299528-3299531,3299814-3299949,3300034-3300090,
3301689-3301786,3301876-3301947,3302056-3302228,
3302552-3302698,3303113-3303336,3305300-3305306,
3305634-3305800,3306033-3306068,3306787-3307004,
3307115-3307172,3307761-3307842,3308045-3308207,
3308594-3308598,3308700-3308885,3308969-3309548,
3309642-3309774,3309880-3309948,3310184-3310395,
3310654-3310891,3311228-3311386,3311501-3311926,
3312010-3312447,3312593-3312712,3312784-3313266,
3313471-3314009,3314178-3314667,3314836-3314904,
3315735-3315839,3315940-3316158,3316254-3316508,
3316602-3316651,3317175-3317284,3317372-3317454,
3317560-3317772,3317870-3318040
Length = 2391
Score = 32.3 bits (70), Expect = 0.45
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = +1
Query: 226 EIKITEDLSIV-KTGTVEDDESADPRLAKDPAYEMFDKVDKFLQSHTLRVKVPEEITKSA 402
E+ + E + V K + +D R KD + M K+ KF+++H +K EE+ +S
Sbjct: 126 EVILDEKIDEVRKISSKVNDLEVQLRREKDECHRMTSKMKKFIKAHARFLKAQEEVKRSQ 185
Query: 403 A 405
A
Sbjct: 186 A 186
>09_04_0192 + 15478270-15480257,15480358-15480640,15480727-15481116
Length = 886
Score = 29.9 bits (64), Expect = 2.4
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 8/61 (13%)
Frame = +1
Query: 259 KTGTVEDDESADPRLAKDPAYEMFDKVDKFLQSHTLRVK--------VPEEITKSAASEY 414
+TG V E ADPRLA A E+ D + L S + V+ +P+ ++K A+E
Sbjct: 708 ETGMVWRYEDADPRLAPLQAKELLDHLATVLASEPVAVRSGYKIVEVIPQGVSKGVAAEC 767
Query: 415 V 417
+
Sbjct: 768 I 768
>12_02_0660 + 21636604-21636822
Length = 72
Score = 29.1 bits (62), Expect = 4.2
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = +1
Query: 208 SVANDDEIKITEDLSIVKTGTVEDDESADPRLAKDPAYEMFDKVDK 345
+ + DEIK T D T + DDE+ DP+ ++ P E+ DK
Sbjct: 19 TTSRTDEIKATTDKVNDITTSHGDDETRDPQTSRGPEDEVVGPGDK 64
>11_01_0553 - 4368233-4368320,4368427-4368514,4368595-4368668,
4369000-4369160,4369233-4369322,4369406-4369480,
4369569-4369640,4369719-4369891,4369964-4370078,
4370274-4370387,4370582-4370661,4370755-4370842,
4370941-4370997,4371111-4371176,4371254-4371349,
4371459-4371566,4371941-4372039,4372108-4372227,
4372399-4372437,4372940-4373026,4373276-4373347,
4373443-4373509,4374455-4374546,4374631-4374708,
4374785-4374922,4375029-4375164,4375306-4375468,
4375690-4375849,4375950-4376056,4376149-4376259,
4377850-4378159
Length = 1107
Score = 29.1 bits (62), Expect = 4.2
Identities = 24/93 (25%), Positives = 43/93 (46%), Gaps = 1/93 (1%)
Frame = +1
Query: 127 LVKNIYNECLSQYSVECVKPRTLQWMSSVANDDEI-KITEDLSIVKTGTVEDDESADPRL 303
LVKN+ ECL + V+ P +Q++ + +D + ++ L ++ G + E +
Sbjct: 846 LVKNLVTECLHKILVDRDVPGAVQYVKNTISDLLMNRVDLSLLVITKGLTKTGEDYAVKA 905
Query: 304 AKDPAYEMFDKVDKFLQSHTLRVKVPEEITKSA 402
A E K D + T+ +VP I K+A
Sbjct: 906 AHVELAERMRKRDA-ATAPTVGDRVPYVIIKAA 937
>06_02_0036 - 10844876-10846173,10846490-10847012
Length = 606
Score = 28.7 bits (61), Expect = 5.5
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +2
Query: 287 LPTLDWPRIRPTKCSTKWTSF 349
+ T D P++ PTKCST +SF
Sbjct: 74 IATKDLPKVTPTKCSTLCSSF 94
>08_01_1072 +
10954080-10954851,10954956-10955027,10955108-10955191,
10955285-10955353,10955814-10955916,10956033-10956107,
10956204-10956366,10956502-10956571,10956649-10956735,
10956795-10956836,10956904-10956969,10957201-10957275,
10960149-10960271,10960683-10960966
Length = 694
Score = 28.3 bits (60), Expect = 7.3
Identities = 18/49 (36%), Positives = 26/49 (53%)
Frame = +1
Query: 247 LSIVKTGTVEDDESADPRLAKDPAYEMFDKVDKFLQSHTLRVKVPEEIT 393
+ IV T +VED+ +A+P K P + D V K + LR PE +T
Sbjct: 260 VKIVPT-SVEDERAANPEPVKPPEFS-GDPVKKLAATIDLRAVNPEPVT 306
>10_08_0495 -
18318028-18320399,18322450-18322981,18323097-18323200,
18323653-18323701,18323979-18324119,18324889-18324957,
18325048-18325137,18325301-18326251,18326831-18327502
Length = 1659
Score = 27.9 bits (59), Expect = 9.6
Identities = 15/56 (26%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Frame = +1
Query: 331 DKVDKFLQSHTLRVKVPEEITKSAASEY-VPRSLLTDLPSELDMPLDGEDEAEVVE 495
+ VD +++ +++ EIT+ E +P S+L+ L + +PLD +++ E V+
Sbjct: 385 EMVDNIIRTQAEKLQQASEITRVRLKEMDLPDSILS-LEGNITLPLDLKEDVEAVQ 439
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,538,683
Number of Sequences: 37544
Number of extensions: 423848
Number of successful extensions: 1265
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1233
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1265
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2103658836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -