Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0550
(783 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_46098| Best HMM Match : RnaseH (HMM E-Value=0.089) 37 0.016
SB_5693| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.46
SB_19994| Best HMM Match : Pox_J1 (HMM E-Value=7.6) 31 0.80
SB_41914| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.4
SB_41021| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2
SB_19567| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2
SB_42730| Best HMM Match : Ank (HMM E-Value=0.00016) 29 5.6
SB_19519| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.6
SB_10773| Best HMM Match : TatC (HMM E-Value=0.31) 29 5.6
SB_24365| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.6
SB_2835| Best HMM Match : Spectrin (HMM E-Value=0.14) 28 7.4
SB_24364| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.8
>SB_46098| Best HMM Match : RnaseH (HMM E-Value=0.089)
Length = 822
Score = 37.1 bits (82), Expect = 0.016
Identities = 24/65 (36%), Positives = 33/65 (50%)
Frame = +1
Query: 121 SKLVKNIYNECLSQYSVECVKPRTLQWMSSVANDDEIKITEDLSIVKTGTVEDDESADPR 300
SKLVK Y L + +KP Q +SS+ DDEI TE+ I++T T + PR
Sbjct: 15 SKLVKQRYRTELRSRILASIKPEISQALSSLL-DDEIHGTEEEKIMRTATRSFTKGLKPR 73
Query: 301 LAKDP 315
+ P
Sbjct: 74 SSTHP 78
>SB_5693| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1429
Score = 32.3 bits (70), Expect = 0.46
Identities = 21/64 (32%), Positives = 31/64 (48%)
Frame = +1
Query: 124 KLVKNIYNECLSQYSVECVKPRTLQWMSSVANDDEIKITEDLSIVKTGTVEDDESADPRL 303
KLVK Y L ++ +KP Q +S + DEI TE+ I++T T + PR
Sbjct: 460 KLVKRRYGTELRSRTLALIKPEISQALSLLL--DEIHGTEEAKIMRTATQSFTKGPKPRS 517
Query: 304 AKDP 315
+ P
Sbjct: 518 STHP 521
>SB_19994| Best HMM Match : Pox_J1 (HMM E-Value=7.6)
Length = 348
Score = 31.5 bits (68), Expect = 0.80
Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Frame = +1
Query: 244 DLSIVKTGTVEDDESADPRLAKDPAYEMFDK--VDKFLQSHTLRVKVPEEITKSAASEYV 417
D+SIV G V D +DPR+ KDP ++F VD FL + VP+ + S +
Sbjct: 34 DVSIVLNGAVAD---SDPRVLKDPKRKVFKTGGVDAFL------LTVPQSLDPSEEMKEA 84
Query: 418 PRSLLTDLP 444
P++ +P
Sbjct: 85 PKTKKEGIP 93
>SB_41914| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 127
Score = 29.9 bits (64), Expect = 2.4
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +2
Query: 215 PTTTKLRSLKIFLS*RPEQLRMMNLPTLDWPRIRPTK 325
PT KL+++ + RP+ L + + P DWP +R T+
Sbjct: 5 PTGRKLQAVLHNNAIRPQSLTLCHQPNCDWPTVRLTQ 41
>SB_41021| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 394
Score = 29.1 bits (62), Expect = 4.2
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = +1
Query: 199 WMSSVANDDEIKITEDLSIVKTGTVEDD 282
W++ V N+D +K+TE+ S+V T + D
Sbjct: 3 WINVVDNEDLVKLTEESSVVILATYDGD 30
>SB_19567| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1383
Score = 29.1 bits (62), Expect = 4.2
Identities = 13/34 (38%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Frame = +1
Query: 358 HTLRVKVPEEITKSAASEYVPRSLLTDL-PSELD 456
H + V + +++AA +YVPR++L DL P+ +D
Sbjct: 954 HCKEIGVGSKTSEAAAGKYVPRAVLVDLEPTVID 987
>SB_42730| Best HMM Match : Ank (HMM E-Value=0.00016)
Length = 999
Score = 28.7 bits (61), Expect = 5.6
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = +1
Query: 340 DKFLQSHTLRVKVPEEITKSAASEYVPRSLLTDLPSELDMPLDGEDE 480
+K SH + K + A E + L P+ELD+P D EDE
Sbjct: 155 NKASASHYTQKKTTGSSSTEALREDISYMLEAVTPAELDVPTDNEDE 201
>SB_19519| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 401
Score = 28.7 bits (61), Expect = 5.6
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = -3
Query: 226 RRRWQPMTSTAGSSVS 179
RRRW P+TST G VS
Sbjct: 88 RRRWMPLTSTKGGPVS 103
>SB_10773| Best HMM Match : TatC (HMM E-Value=0.31)
Length = 380
Score = 28.7 bits (61), Expect = 5.6
Identities = 15/55 (27%), Positives = 28/55 (50%)
Frame = -1
Query: 450 FRRQVSQERPWHVL*SSTFRYLLWNFHPKSMTLEKLVHFVEHFVGRILGQSRVGR 286
F+ + ++ W + +S + +LWN L V+F + + R+LGQ R+ R
Sbjct: 152 FKTKTLEDEEWGLTITS-LKNVLWNLRYPLFYLVGTVYFRKRHIERVLGQIRLTR 205
>SB_24365| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 532
Score = 28.7 bits (61), Expect = 5.6
Identities = 24/97 (24%), Positives = 37/97 (38%)
Frame = +1
Query: 205 SSVANDDEIKITEDLSIVKTGTVEDDESADPRLAKDPAYEMFDKVDKFLQSHTLRVKVPE 384
S N+D++ T D K T DD+ D E F++++K P
Sbjct: 323 SQTVNEDKVPTTNDDDEDKASTTNDDDQDKASTTND--NEEFEEIEK---------NPPV 371
Query: 385 EITKSAASEYVPRSLLTDLPSELDMPLDGEDEAEVVE 495
E + SE + LL + E P ED+ + E
Sbjct: 372 EPAEYTISEEKRKDLLRQIIEEESTPSSDEDDGDYEE 408
>SB_2835| Best HMM Match : Spectrin (HMM E-Value=0.14)
Length = 1089
Score = 28.3 bits (60), Expect = 7.4
Identities = 13/48 (27%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = +1
Query: 211 VANDDEIKITEDLSIVKTGTVEDDESADPRLAKDPAY-EMFDKVDKFL 351
+ +DD+I +D++ T EDD +++ + +PA E+ D+ ++ L
Sbjct: 114 ITSDDDITSDDDITSDDDITSEDDITSEDNITTEPAIKEVIDRANELL 161
>SB_24364| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 648
Score = 27.9 bits (59), Expect = 9.8
Identities = 20/97 (20%), Positives = 34/97 (35%)
Frame = +1
Query: 205 SSVANDDEIKITEDLSIVKTGTVEDDESADPRLAKDPAYEMFDKVDKFLQSHTLRVKVPE 384
S N+D++ T D K T DD+ D + + + + P
Sbjct: 79 SQTVNEDKVPTTNDDDEDKASTTNDDDKDKASTTNDDDQDKASTTNDNEEFGEIEKNPPV 138
Query: 385 EITKSAASEYVPRSLLTDLPSELDMPLDGEDEAEVVE 495
E + SE + LL + E P +D+ + E
Sbjct: 139 EPAEYPISEDKRKDLLRQIIEEERTPSSDDDDGDYEE 175
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,658,302
Number of Sequences: 59808
Number of extensions: 493635
Number of successful extensions: 1515
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1393
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1512
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2143884611
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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