Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0550
         (783 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    26   0.45 
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    25   1.1  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   3.2  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   3.2  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   7.4  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   7.4  

>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 25.8 bits (54), Expect = 0.45
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -2

Query: 620 KGTRTEALNLRPSRKGRITFLMK 552
           +  R  ALN++P+ KGRIT   K
Sbjct: 445 QAVRMSALNVQPTSKGRITLNSK 467


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = +1

Query: 271 VEDDESADPRLAKDPAYEMFD--KVDKFLQSHTLRV 372
           +++DES  P+L   P +EM D  K+D  +    +RV
Sbjct: 82  LKNDESESPKLNPYPNWEMNDINKIDSIINIIRVRV 117


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 8/27 (29%), Positives = 17/27 (62%)
 Frame = -1

Query: 735 VHDLGLREFEDDHGTR*NKGNETKSKS 655
           ++D+GL   + D G+  N G+E+  ++
Sbjct: 186 INDIGLNRRDSDDGSDGNDGDESSCRA 212


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 10/33 (30%), Positives = 15/33 (45%)
 Frame = +3

Query: 9   SQSPLPSNKTGTVSNSENGQNNSVVIDRCLRKC 107
           S  P  S   G     E   N+++ +  C+RKC
Sbjct: 78  SIDPCASKYCGIGKECELSPNSTIAVCVCMRKC 110


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -2

Query: 212 TDDIHCRVLGFTHSTEYWLR 153
           T  +HC V G T  T  WL+
Sbjct: 824 TATLHCEVHGDTPVTVTWLK 843


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -2

Query: 212 TDDIHCRVLGFTHSTEYWLR 153
           T  +HC V G T  T  WL+
Sbjct: 820 TATLHCEVHGDTPVTVTWLK 839


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 204,675
Number of Sequences: 438
Number of extensions: 4256
Number of successful extensions: 17
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24639531
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)