Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0550
         (783 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g36650.1 68417.m05201 transcription factor IIB (TFIIB) family...    29   2.6  
At5g43620.1 68418.m05332 S-locus protein-related contains some s...    29   3.5  
At1g66500.1 68414.m07554 zinc finger (C2H2-type) family protein ...    28   6.1  
At5g14240.1 68418.m01664 expressed protein                             28   8.0  

>At4g36650.1 68417.m05201 transcription factor IIB (TFIIB) family
           protein contains Pfam domain, PF00382: Transcription
           factor TFIIB repeat
          Length = 503

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 18/52 (34%), Positives = 29/52 (55%)
 Frame = +1

Query: 103 SATYPASKLVKNIYNECLSQYSVECVKPRTLQWMSSVANDDEIKITEDLSIV 258
           SAT   ++ V+ +   CL Q   E  +PRTLQ +S  AN  + +I + + I+
Sbjct: 163 SATCLRNRSVEALATACLVQAIREAQEPRTLQEISIAANVQQKEIGKYIKIL 214


>At5g43620.1 68418.m05332 S-locus protein-related contains some
           similarity to S-locus protein 4 GI:6069478 from
           [Brassica rapa]
          Length = 410

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -3

Query: 163 TG*GIRYKCS*LVSMPDTWHLRRQRSITT 77
           T  G+R+KC    S    WH+R+ RS+ T
Sbjct: 250 TSCGVRFKCQEEHSKHMDWHVRKNRSVKT 278


>At1g66500.1 68414.m07554 zinc finger (C2H2-type) family protein
           contains Prosite PS00028: Zinc finger, C2H2 type,
           domain; similar to S-locus protein 4 (GI:6069478)
           [Brassica rapa]; similar to Pre-mRNA cleavage complex II
           protein Pcf11 (Fragment) (Swiss-Prot:O94913) [Homo
           sapiens]
          Length = 416

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -3

Query: 154 GIRYKCS*LVSMPDTWHLRRQRSITT 77
           G+R+KC    S    WH+R+ RS+ T
Sbjct: 260 GLRFKCQEEHSKHMDWHVRKNRSVKT 285


>At5g14240.1 68418.m01664 expressed protein
          Length = 256

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +1

Query: 61  MARIIVLLSIVAFASATYPASKLVKNIYNECLSQYSVECVKPRTL 195
           +A   +LL  +    + YPA+K VK I  +C+  Y  +C  P  L
Sbjct: 132 VAECSLLLGCLDELGSRYPATKFVKIISTDCIPNYP-DCNLPTLL 175


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,528,530
Number of Sequences: 28952
Number of extensions: 342552
Number of successful extensions: 1019
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1003
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1019
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1755792000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)