Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0549
         (695 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q5B9S9 Cluster: Putative uncharacterized protein; n=2; ...    34   2.9  
UniRef50_Q8I3N2 Cluster: Putative uncharacterized protein PFE116...    33   8.8  
UniRef50_Q33565 Cluster: CR3 protein; n=2; Trypanosoma brucei|Re...    33   8.8  

>UniRef50_Q5B9S9 Cluster: Putative uncharacterized protein; n=2;
           Trichocomaceae|Rep: Putative uncharacterized protein -
           Emericella nidulans (Aspergillus nidulans)
          Length = 1570

 Score = 34.3 bits (75), Expect = 2.9
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = +1

Query: 454 WEISKPPKSNITYVVKILNVSDTGVPSFEKISASETHG 567
           W I+KPP  ++  V+++L  SDT  PS  K  A   +G
Sbjct: 236 WSIAKPPGKDVPRVIRVLKRSDTSSPSEPKWMAWSKNG 273


>UniRef50_Q8I3N2 Cluster: Putative uncharacterized protein PFE1160w;
           n=1; Plasmodium falciparum 3D7|Rep: Putative
           uncharacterized protein PFE1160w - Plasmodium falciparum
           (isolate 3D7)
          Length = 1101

 Score = 32.7 bits (71), Expect = 8.8
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = +1

Query: 154 LNHTFIYKAFLCKSRFYFHIKHV**FCFD*NVLLSWFFSITLLYYHN 294
           L+H FI+   LC    +    ++  F ++ N+LL W  +  + Y  N
Sbjct: 782 LSHNFIHTLNLCNENMFLKRNNISNFLYNKNILLKWLNNFMIYYLEN 828


>UniRef50_Q33565 Cluster: CR3 protein; n=2; Trypanosoma brucei|Rep:
           CR3 protein - Trypanosoma brucei
          Length = 70

 Score = 32.7 bits (71), Expect = 8.8
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = +1

Query: 79  LWIFYLCNAD*VLLLLCKIFNYCFFLNHTFIYKAFLCKSRFYFHI 213
           L++ + C      L LC +F++CF L+  F++   L    F+F I
Sbjct: 13  LFVHFFCFLFVCDLFLCLLFSFCFLLDFCFLFNMGLLLCLFFFFI 57


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 632,606,382
Number of Sequences: 1657284
Number of extensions: 12826013
Number of successful extensions: 24582
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 23786
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24566
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 54958682807
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)