Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0549
         (695 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13170| Best HMM Match : YTV (HMM E-Value=2.8)                       30   1.6  
SB_1528| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.7  
SB_20440| Best HMM Match : SRP-alpha_N (HMM E-Value=1.4)               29   4.8  
SB_26485| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.8  
SB_40604| Best HMM Match : OATP (HMM E-Value=1.5)                      28   6.3  
SB_12216| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.3  
SB_22798| Best HMM Match : Cadherin (HMM E-Value=0)                    28   8.3  

>SB_13170| Best HMM Match : YTV (HMM E-Value=2.8)
          Length = 281

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 21/59 (35%), Positives = 32/59 (54%)
 Frame = +1

Query: 478 SNITYVVKILNVSDTGVPSFEKISASETHGVPRNRSIVWYKYHYFIRSSKAKCGYDNIS 654
           + + Y V + N S+TGVP +E ++ SET GVP   + V Y Y     S      Y+N++
Sbjct: 59  TGVPYYVNMAN-SETGVPYYENMANSET-GVPYYDTGVPY-YENMANSETGVPYYENMA 114



 Score = 30.3 bits (65), Expect = 1.6
 Identities = 21/68 (30%), Positives = 36/68 (52%)
 Frame = +1

Query: 451 WWEISKPPKSNITYVVKILNVSDTGVPSFEKISASETHGVPRNRSIVWYKYHYFIRSSKA 630
           ++E     ++ + Y   + N S+TGVP +E ++ SET GVP   + V Y Y     S+  
Sbjct: 175 YYENMANSETGVPYYENMAN-SETGVPYYENMANSET-GVPYYETGVPY-YENMANSATG 231

Query: 631 KCGYDNIS 654
              Y+N++
Sbjct: 232 VPYYENLA 239



 Score = 29.5 bits (63), Expect = 2.7
 Identities = 21/68 (30%), Positives = 35/68 (51%)
 Frame = +1

Query: 451 WWEISKPPKSNITYVVKILNVSDTGVPSFEKISASETHGVPRNRSIVWYKYHYFIRSSKA 630
           ++E     ++ + Y   + N S+TGVP +E ++ SET GVP   + V Y Y     S   
Sbjct: 129 YYENMANSETGVPYYENMAN-SETGVPYYENMANSET-GVPYYETGVPY-YENMANSETG 185

Query: 631 KCGYDNIS 654
              Y+N++
Sbjct: 186 VPYYENMA 193


>SB_1528| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2409

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +1

Query: 397  NIAQTSVALI*LRGYQASWWEISKPPKSNITYVVKILNVSDTG 525
            NI Q++V L+        W  +S PP+  +TY+V+    SD G
Sbjct: 1243 NITQSAVLLL--------WTSVSHPPEFAVTYIVEYQKASDAG 1277


>SB_20440| Best HMM Match : SRP-alpha_N (HMM E-Value=1.4)
          Length = 526

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 14/49 (28%), Positives = 23/49 (46%)
 Frame = +1

Query: 508 NVSDTGVPSFEKISASETHGVPRNRSIVWYKYHYFIRSSKAKCGYDNIS 654
           N + T +  F ++   E   V     +VW KY    R  +A+ G +N+S
Sbjct: 72  NEAKTALEQFIELGFVEKISVEIFEQLVWRKYKCTARQGRAETGQENVS 120


>SB_26485| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 801

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +1

Query: 151 FLNHTFIYKAFLCKSRFYFHIKHV 222
           F+NH  +++A  C S  Y  IKH+
Sbjct: 204 FINHVHVHQARTCSSSTYMFIKHL 227


>SB_40604| Best HMM Match : OATP (HMM E-Value=1.5)
          Length = 142

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -2

Query: 490 MLCSILGVLKFPTNLPGTRAIK 425
           +  S  G+L FP  LPGTRA++
Sbjct: 100 LFVSAFGLLGFPAELPGTRAMR 121


>SB_12216| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2992

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = +1

Query: 430  LRGYQASWWEISKP-PKSNITYVVKI 504
            LR Y  ++WE+ KP  K+NIT  V +
Sbjct: 1609 LRAYVVTYWEMEKPDTKTNITVQVSV 1634


>SB_22798| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 3255

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = +1

Query: 421  LI*LRGYQASWWEISKPPKSNITYV-VKILNVSDTGVPSFEKISASET 561
            L+ L   Q    +   PP SN+T+V +KIL+ +D   P F+  S S +
Sbjct: 1756 LVSLYAIQVRVTDAGNPPLSNLTWVTIKILDENDNS-PKFDSSSYSSS 1802


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,638,304
Number of Sequences: 59808
Number of extensions: 396640
Number of successful extensions: 631
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 575
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 621
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1817559367
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)