Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0549
         (695 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U17989-1|AAB81551.1|  713|Homo sapiens GS2NA protein.                  30   6.9  
BC132673-1|AAI32674.1|  713|Homo sapiens striatin, calmodulin bi...    30   6.9  
BC126221-1|AAI26222.1|  713|Homo sapiens striatin, calmodulin bi...    30   6.9  
AF243424-1|AAF81201.1|  678|Homo sapiens SG2NA beta isoform prot...    30   6.9  

>U17989-1|AAB81551.1|  713|Homo sapiens GS2NA protein.
          Length = 713

 Score = 30.3 bits (65), Expect = 6.9
 Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
 Frame = +1

Query: 505 LNVSDTGVPSFEKISASETHG--VPRNRSIVWYKYHYFIRSSKAKCGYDNISIFISILHV 678
           LN  D  +P+FE     +T     P+N  + W +    +R    + GY +  + +    V
Sbjct: 141 LNQGDLKMPTFESEETKDTEAPTAPQNSQLTWKQGRQLLRQYLQEVGYTDTILDVRSQRV 200

Query: 679 RS 684
           RS
Sbjct: 201 RS 202


>BC132673-1|AAI32674.1|  713|Homo sapiens striatin, calmodulin
           binding protein 3 protein.
          Length = 713

 Score = 30.3 bits (65), Expect = 6.9
 Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
 Frame = +1

Query: 505 LNVSDTGVPSFEKISASETHG--VPRNRSIVWYKYHYFIRSSKAKCGYDNISIFISILHV 678
           LN  D  +P+FE     +T     P+N  + W +    +R    + GY +  + +    V
Sbjct: 141 LNQGDLKMPTFESEETKDTEAPTAPQNSQLTWKQGRQLLRQYLQEVGYTDTILDVRSQRV 200

Query: 679 RS 684
           RS
Sbjct: 201 RS 202


>BC126221-1|AAI26222.1|  713|Homo sapiens striatin, calmodulin
           binding protein 3 protein.
          Length = 713

 Score = 30.3 bits (65), Expect = 6.9
 Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
 Frame = +1

Query: 505 LNVSDTGVPSFEKISASETHG--VPRNRSIVWYKYHYFIRSSKAKCGYDNISIFISILHV 678
           LN  D  +P+FE     +T     P+N  + W +    +R    + GY +  + +    V
Sbjct: 141 LNQGDLKMPTFESEETKDTEAPTAPQNSQLTWKQGRQLLRQYLQEVGYTDTILDVRSQRV 200

Query: 679 RS 684
           RS
Sbjct: 201 RS 202


>AF243424-1|AAF81201.1|  678|Homo sapiens SG2NA beta isoform
           protein.
          Length = 678

 Score = 30.3 bits (65), Expect = 6.9
 Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
 Frame = +1

Query: 505 LNVSDTGVPSFEKISASETHG--VPRNRSIVWYKYHYFIRSSKAKCGYDNISIFISILHV 678
           LN  D  +P+FE     +T     P+N  + W +    +R    + GY +  + +    V
Sbjct: 22  LNQGDLKMPTFESEETKDTEAPTAPQNSQLTWKQGRQLLRQYLQEVGYTDTILDVRSQRV 81

Query: 679 RS 684
           RS
Sbjct: 82  RS 83


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 92,659,538
Number of Sequences: 237096
Number of extensions: 1922243
Number of successful extensions: 2484
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2423
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2484
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8007229802
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)