Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0549
         (695 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92837-3|CAB07402.3|  502|Caenorhabditis elegans Hypothetical pr...    28   7.3  
Z81115-3|CAB03293.2|  486|Caenorhabditis elegans Hypothetical pr...    27   9.7  
Z66511-5|CAA91317.1| 1095|Caenorhabditis elegans Hypothetical pr...    27   9.7  
Z49130-2|CAA88966.1|  396|Caenorhabditis elegans Hypothetical pr...    27   9.7  

>Z92837-3|CAB07402.3|  502|Caenorhabditis elegans Hypothetical
           protein R03E1.3 protein.
          Length = 502

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +1

Query: 598 KYHYFIRSSKAKCGYDNISIFISILHV 678
           KY+Y +R  K++     +++F+SI HV
Sbjct: 37  KYNYKVRPVKSEATVTQVNVFLSIAHV 63


>Z81115-3|CAB03293.2|  486|Caenorhabditis elegans Hypothetical
           protein T05D4.3 protein.
          Length = 486

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = -2

Query: 481 SILGVLKFPTNLPGTRAIK*ALPKFVQYLKKSVV 380
           +++GV    TNL GTR++  +   +   LK+S+V
Sbjct: 323 TVIGVFMAQTNLTGTRSLSDSSTMYAYGLKESIV 356


>Z66511-5|CAA91317.1| 1095|Caenorhabditis elegans Hypothetical
           protein F07A11.4 protein.
          Length = 1095

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
 Frame = +1

Query: 472 PKSNITY--VVKILNVSDTGVPSFEKISASETHGVPRNRSI 588
           P+S +TY  + ++L       P  E  S+S     PR RS+
Sbjct: 774 PRSQLTYQHLYRVLEAKSRHTPPGESSSSSSVSSTPRRRSV 814


>Z49130-2|CAA88966.1|  396|Caenorhabditis elegans Hypothetical
           protein T06D8.3 protein.
          Length = 396

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -1

Query: 602 YLYHTMLLLRGTPCVSDALIFSKDGTPVSDTFKILTTY 489
           Y+Y+ M+ LRG P +   LIF   G  + D+F  +  Y
Sbjct: 235 YIYY-MINLRGAPLLRPLLIFGFMGLCIVDSFSRINGY 271


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,313,520
Number of Sequences: 27780
Number of extensions: 335328
Number of successful extensions: 582
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 564
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 580
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)