Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0549
         (695 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g22165.1 68417.m03204 F-box family protein contains F-box dom...    28   6.8  
At1g48090.2 68414.m05363 C2 domain-containing protein contains P...    27   9.0  
At1g48090.1 68414.m05362 C2 domain-containing protein contains P...    27   9.0  

>At4g22165.1 68417.m03204 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 363

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 10/35 (28%), Positives = 21/35 (60%)
 Frame = +2

Query: 38  DLLIKKLYLICRSFYGSFIYVMQTEYYCYCVKYLT 142
           DL ++    +CR+ YGS++ +  ++Y+ Y +   T
Sbjct: 86  DLGVEFAKSVCRATYGSWLLMQDSKYHLYILNIFT 120


>At1g48090.2 68414.m05363 C2 domain-containing protein contains Pfam
            profile: PF00168 C2 domain
          Length = 3427

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 10/37 (27%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = -1

Query: 491  YVMFDFGGFEISHQLAWY--PRNQMSATEVCAIFEKV 387
            Y+  D G  E+S++++W+  P    +A  V  +  K+
Sbjct: 1464 YIQLDLGQLEVSNEISWHGCPEKDATAVRVDVLHAKI 1500


>At1g48090.1 68414.m05362 C2 domain-containing protein contains Pfam
            profile: PF00168 C2 domain
          Length = 4144

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 10/37 (27%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = -1

Query: 491  YVMFDFGGFEISHQLAWY--PRNQMSATEVCAIFEKV 387
            Y+  D G  E+S++++W+  P    +A  V  +  K+
Sbjct: 1464 YIQLDLGQLEVSNEISWHGCPEKDATAVRVDVLHAKI 1500


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,786,931
Number of Sequences: 28952
Number of extensions: 282700
Number of successful extensions: 546
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 539
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 546
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)