Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0548
(787 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_1086 + 8539821-8540024,8540132-8540237,8540635-8540660 87 1e-17
01_06_0783 + 31975261-31975398,31975583-31975726 85 5e-17
01_05_0324 - 20946774-20946935,20947301-20947780 83 2e-16
02_04_0361 - 22359278-22359439,22362291-22362728 78 7e-15
06_03_0116 + 16816970-16817209,16817328-16817461,16818716-16818749 77 2e-14
12_01_0612 - 5044639-5044858,5045010-5045167,5045440-5045684,504... 29 3.2
11_06_0493 - 24310412-24311362,24311437-24311783,24311857-24311989 29 5.5
06_01_0125 + 970746-970967,971126-971226,971897-972026,972108-97... 28 7.3
>01_01_1086 + 8539821-8540024,8540132-8540237,8540635-8540660
Length = 111
Score = 87.0 bits (206), Expect = 1e-17
Identities = 38/58 (65%), Positives = 45/58 (77%)
Frame = +3
Query: 84 KAVIKNADMSEEMQQDAVDCATQALEKFNIEKDIAAFIKKEFDKKYNPTWHCIVGRNF 257
K +K+ADM EEM+Q+A D A A EK +EKDIA +IKKEFDK + PTWHCIVGRNF
Sbjct: 46 KIQLKSADMKEEMRQEAFDIARVAFEKHTMEKDIAEYIKKEFDKNHGPTWHCIVGRNF 103
>01_06_0783 + 31975261-31975398,31975583-31975726
Length = 93
Score = 85.4 bits (202), Expect = 5e-17
Identities = 40/89 (44%), Positives = 58/89 (65%), Gaps = 2/89 (2%)
Frame = +3
Query: 72 MCDRKAVIKNADMSEEMQQDAVDCATQALEKFNIE--KDIAAFIKKEFDKKYNPTWHCIV 245
M + KA++++ DM +MQ A+ A +AL++F++ + IAA IKKEFD + P W C+V
Sbjct: 1 MLEGKAMVEDTDMPVKMQLQAMSAAYKALDRFDVLDCRSIAAHIKKEFDMIHGPGWQCVV 60
Query: 246 GRNFGSYVTHETRHFIYFYLGQVAILLFK 332
G +FG Y TH FIYF LG + L+FK
Sbjct: 61 GASFGCYFTHSKGSFIYFKLGALRFLVFK 89
>01_05_0324 - 20946774-20946935,20947301-20947780
Length = 213
Score = 83.0 bits (196), Expect = 2e-16
Identities = 39/81 (48%), Positives = 56/81 (69%), Gaps = 3/81 (3%)
Frame = +3
Query: 102 ADMSEEMQQDAVDCATQA---LEKFNIEKDIAAFIKKEFDKKYNPTWHCIVGRNFGSYVT 272
ADMS MQ A CA ++ L+KF+ + +A +KKEFDK Y PTWHCIVG ++GS+VT
Sbjct: 125 ADMSPFMQLHAFRCAKRSHDSLDKFS-SRQLAHDVKKEFDKVYGPTWHCIVGTSYGSFVT 183
Query: 273 HETRHFIYFYLGQVAILLFKS 335
H F+YF + ++ ++LFK+
Sbjct: 184 HARGCFLYFSMDKIIVMLFKT 204
>02_04_0361 - 22359278-22359439,22362291-22362728
Length = 199
Score = 78.2 bits (184), Expect = 7e-15
Identities = 42/100 (42%), Positives = 58/100 (58%), Gaps = 4/100 (4%)
Frame = +3
Query: 48 KQKQTQDKMCDRKAVIK--NADMSEEMQQDAVDCATQALEKFNI--EKDIAAFIKKEFDK 215
K+K+ + +RK ++ ADM MQ+ AV A A+ K +A +KKEFD
Sbjct: 91 KEKEMEKGKEERKVSVRVRAADMPLAMQRRAVRLAFDAVAAMPRLDSKRLALALKKEFDA 150
Query: 216 KYNPTWHCIVGRNFGSYVTHETRHFIYFYLGQVAILLFKS 335
Y P WHCIVG FGSYVTH F+YF + +V +LLF++
Sbjct: 151 TYGPAWHCIVGTGFGSYVTHSVGGFLYFSVDKVYVLLFRT 190
>06_03_0116 + 16816970-16817209,16817328-16817461,16818716-16818749
Length = 135
Score = 76.6 bits (180), Expect = 2e-14
Identities = 35/64 (54%), Positives = 44/64 (68%)
Frame = +3
Query: 72 MCDRKAVIKNADMSEEMQQDAVDCATQALEKFNIEKDIAAFIKKEFDKKYNPTWHCIVGR 251
+ K IK+A+M EEM+Q+A D A EK +EKDI +IK EFDK + PTWHCIVG
Sbjct: 54 LAGHKIQIKSANMKEEMRQEAFDIDRVAFEKHTMEKDIVEYIK-EFDKNHGPTWHCIVGH 112
Query: 252 NFGS 263
NFG+
Sbjct: 113 NFGT 116
>12_01_0612 -
5044639-5044858,5045010-5045167,5045440-5045684,
5046006-5046294,5047540-5048561,5049320-5049389
Length = 667
Score = 29.5 bits (63), Expect = 3.2
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Frame = +3
Query: 30 EIVHLSKQKQTQDKMCDRKA-VIKNADMSEEMQQDAVDCATQALEKFNIEKDIAAFIKKE 206
E L +++ + CD + +N + EE Q +DC + E+F+ E+D IK
Sbjct: 567 EFERLLQEELARAIECDVDSETTENCKLREEQIQRIIDCQVKDAEEFDAEQD--ELIKTH 624
Query: 207 FDKKYN 224
+KK N
Sbjct: 625 EEKKAN 630
>11_06_0493 - 24310412-24311362,24311437-24311783,24311857-24311989
Length = 476
Score = 28.7 bits (61), Expect = 5.5
Identities = 15/52 (28%), Positives = 27/52 (51%)
Frame = -1
Query: 286 WRVSCVTYEPKLRPTMQCQVGLYFLSNSFLMNAAMSFSMLNFSSA*VAQSTA 131
WR + +R + C VGL+F + ++A + +S L F A +A +T+
Sbjct: 260 WRELLLRPSAMVRRIVTCVVGLHFFQQASGIDAIVLYSPLVFKKAGMASNTS 311
>06_01_0125 +
970746-970967,971126-971226,971897-972026,972108-972333,
972400-972502,972519-972594,972710-973333
Length = 493
Score = 28.3 bits (60), Expect = 7.3
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +3
Query: 51 QKQTQDKMCDRKAVIKNADMSEEMQQDAVDCATQALEK 164
Q + ++K C KA + + S + +QD +D Q EK
Sbjct: 259 QHRKRNKFCGHKAAVDRLNESGKNEQDRIDDVVQMYEK 296
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,906,714
Number of Sequences: 37544
Number of extensions: 361546
Number of successful extensions: 810
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 794
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 809
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2115411120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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