Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0548
         (787 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00043-8|AAC77510.1|   89|Caenorhabditis elegans Dynein light ch...   185   4e-47
AC084197-38|AAU87807.1|  186|Caenorhabditis elegans Hypothetical...    87   1e-17
Z68507-5|CAA92827.2|   90|Caenorhabditis elegans Hypothetical pr...    83   3e-16
AL161711-3|CAL63993.1|  129|Caenorhabditis elegans Hypothetical ...    67   2e-11
AL161711-2|CAD31700.1|  111|Caenorhabditis elegans Hypothetical ...    67   2e-11
AL161711-1|CAE17960.1|  134|Caenorhabditis elegans Hypothetical ...    30   1.6  
AL032639-6|CAA21630.1|  405|Caenorhabditis elegans Hypothetical ...    29   5.0  
AF053067-1|AAC35273.1|  405|Caenorhabditis elegans cyclin D prot...    29   5.0  
AC024791-14|AAF60658.1|  767|Caenorhabditis elegans P300/cbp ass...    28   8.7  
AC006644-6|AAZ91358.1|  958|Caenorhabditis elegans Hypothetical ...    28   8.7  

>U00043-8|AAC77510.1|   89|Caenorhabditis elegans Dynein light chain
           protein 1 protein.
          Length = 89

 Score =  185 bits (450), Expect = 4e-47
 Identities = 82/89 (92%), Positives = 88/89 (98%)
 Frame = +3

Query: 72  MCDRKAVIKNADMSEEMQQDAVDCATQALEKFNIEKDIAAFIKKEFDKKYNPTWHCIVGR 251
           M DRKAVIKNADMS++MQQDA+DCATQALEK+NIEKDIAA+IKKEFDKKYNPTWHCIVGR
Sbjct: 1   MVDRKAVIKNADMSDDMQQDAIDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGR 60

Query: 252 NFGSYVTHETRHFIYFYLGQVAILLFKSG 338
           NFGSYVTHET+HFIYFYLGQVAILLFKSG
Sbjct: 61  NFGSYVTHETKHFIYFYLGQVAILLFKSG 89


>AC084197-38|AAU87807.1|  186|Caenorhabditis elegans Hypothetical
           protein Y73B6BL.43 protein.
          Length = 186

 Score = 87.0 bits (206), Expect = 1e-17
 Identities = 35/83 (42%), Positives = 57/83 (68%)
 Frame = +3

Query: 87  AVIKNADMSEEMQQDAVDCATQALEKFNIEKDIAAFIKKEFDKKYNPTWHCIVGRNFGSY 266
           A ++++ M   M+Q+A   A +++  +++E DIA  +K  FD++Y P WHCI G++FGS+
Sbjct: 58  ADVQHSRMPRHMEQEACSLAAKSIMTYHLEHDIARHLKMAFDREYGPDWHCICGKHFGSF 117

Query: 267 VTHETRHFIYFYLGQVAILLFKS 335
           VT E   FIYF +G +A +LFK+
Sbjct: 118 VTFEPDSFIYFRIGTIAFMLFKT 140


>Z68507-5|CAA92827.2|   90|Caenorhabditis elegans Hypothetical
           protein M18.2 protein.
          Length = 90

 Score = 82.6 bits (195), Expect = 3e-16
 Identities = 34/89 (38%), Positives = 54/89 (60%)
 Frame = +3

Query: 72  MCDRKAVIKNADMSEEMQQDAVDCATQALEKFNIEKDIAAFIKKEFDKKYNPTWHCIVGR 251
           M + K  +K  DM +  +   +    +A   +NI+KD+AAF+K+E DKK+  TWH I G+
Sbjct: 1   MSEEKIEVKETDMEDPQRDMVISVVREAQRLYNIDKDVAAFVKEELDKKFGATWHVICGK 60

Query: 252 NFGSYVTHETRHFIYFYLGQVAILLFKSG 338
            FGS V++E  HFI     +V ++++K G
Sbjct: 61  CFGSRVSYEMGHFILLKCNKVNVMIYKCG 89


>AL161711-3|CAL63993.1|  129|Caenorhabditis elegans Hypothetical
           protein Y10G11A.2b protein.
          Length = 129

 Score = 66.9 bits (156), Expect = 2e-11
 Identities = 28/81 (34%), Positives = 54/81 (66%)
 Frame = +3

Query: 90  VIKNADMSEEMQQDAVDCATQALEKFNIEKDIAAFIKKEFDKKYNPTWHCIVGRNFGSYV 269
           +I++ ++  E  +++      AL+   IE +IA+F+K++FD KY   W C+VGRNFGS++
Sbjct: 51  IIQDTNLPFEQVEESKKMLGDALQLCGIENEIASFMKRKFDAKYGGHWQCVVGRNFGSHL 110

Query: 270 THETRHFIYFYLGQVAILLFK 332
             +   FI+F + +++++LF+
Sbjct: 111 --DPIQFIHFTVSKISVILFR 129


>AL161711-2|CAD31700.1|  111|Caenorhabditis elegans Hypothetical
           protein Y10G11A.2a protein.
          Length = 111

 Score = 66.9 bits (156), Expect = 2e-11
 Identities = 28/81 (34%), Positives = 54/81 (66%)
 Frame = +3

Query: 90  VIKNADMSEEMQQDAVDCATQALEKFNIEKDIAAFIKKEFDKKYNPTWHCIVGRNFGSYV 269
           +I++ ++  E  +++      AL+   IE +IA+F+K++FD KY   W C+VGRNFGS++
Sbjct: 33  IIQDTNLPFEQVEESKKMLGDALQLCGIENEIASFMKRKFDAKYGGHWQCVVGRNFGSHL 92

Query: 270 THETRHFIYFYLGQVAILLFK 332
             +   FI+F + +++++LF+
Sbjct: 93  --DPIQFIHFTVSKISVILFR 111


>AL161711-1|CAE17960.1|  134|Caenorhabditis elegans Hypothetical
           protein Y10G11A.3 protein.
          Length = 134

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 13/43 (30%), Positives = 26/43 (60%)
 Frame = +3

Query: 90  VIKNADMSEEMQQDAVDCATQALEKFNIEKDIAAFIKKEFDKK 218
           +I+  ++  E  +++      AL+   IE +IA+F+K++FD K
Sbjct: 50  IIQETNLPFEQVEESKKMLGDALQLCGIENEIASFMKRKFDAK 92


>AL032639-6|CAA21630.1|  405|Caenorhabditis elegans Hypothetical
           protein Y38F1A.5 protein.
          Length = 405

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = -1

Query: 253 LRPTMQCQVGLYFLSN 206
           L P+MQC +GLY++SN
Sbjct: 242 LFPSMQCAIGLYYVSN 257


>AF053067-1|AAC35273.1|  405|Caenorhabditis elegans cyclin D
           protein.
          Length = 405

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = -1

Query: 253 LRPTMQCQVGLYFLSN 206
           L P+MQC +GLY++SN
Sbjct: 242 LFPSMQCAIGLYYVSN 257


>AC024791-14|AAF60658.1|  767|Caenorhabditis elegans P300/cbp
           associated factor homologprotein 1 protein.
          Length = 767

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 17/50 (34%), Positives = 23/50 (46%)
 Frame = -3

Query: 401 YPSDNTASAANKKIEVMLNGLTALKEQYSHLSQVEVDEVASLVCHIRAKI 252
           Y  D    + + KI  +L  LTA K  +   S V+V EV     HI+  I
Sbjct: 642 YHLDERDDSLDSKIGAILKKLTADKNAWPFASPVDVKEVPEYYDHIKHPI 691


>AC006644-6|AAZ91358.1|  958|Caenorhabditis elegans Hypothetical
           protein F55A3.1 protein.
          Length = 958

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 13/55 (23%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
 Frame = -3

Query: 203 FLDECSYVLFNVKFLERLSCTVNSILLHLFAH--VSILYDCFAITHLVLGLFLLR 45
           ++D C+  LFN+   +R++    +  + +F H  V ++Y  ++ + ++L   +LR
Sbjct: 520 WMDVCTLPLFNITLSQRIATFATAPFMSIFLHWMVGMVYVFYSASFVILLREILR 574


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,825,826
Number of Sequences: 27780
Number of extensions: 339607
Number of successful extensions: 876
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 853
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 876
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1903721438
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)