Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0546
         (417 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx mori|...    44   0.002
UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bomb...    34   1.4  
UniRef50_A3LSL7 Cluster: Agglutinin-like protein 2; n=1; Pichia ...    31   7.2  
UniRef50_A5GWB8 Cluster: Uncharacterized conserved membrane prot...    31   9.6  
UniRef50_A3PS70 Cluster: YD repeat protein; n=2; Rhodobacter sph...    31   9.6  

>UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx
           mori|Rep: NADPH oxidoreductase - Bombyx mori (Silk moth)
          Length = 191

 Score = 43.6 bits (98), Expect = 0.002
 Identities = 17/22 (77%), Positives = 19/22 (86%)
 Frame = -2

Query: 407 FFLLRWMDELTVHLVLSVYWNP 342
           F LLRW+DELT HLVLS YW+P
Sbjct: 154 FLLLRWVDELTAHLVLSGYWSP 175



 Score = 33.5 bits (73), Expect = 1.8
 Identities = 13/17 (76%), Positives = 15/17 (88%)
 Frame = -1

Query: 345 PIDIYNVNAPPTSRYKF 295
           P  +Y+VNAPPTSRYKF
Sbjct: 175 PRHLYDVNAPPTSRYKF 191


>UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bombyx
           mori (Silk moth)
          Length = 782

 Score = 33.9 bits (74), Expect = 1.4
 Identities = 12/17 (70%), Positives = 13/17 (76%)
 Frame = -1

Query: 219 AGWWYLPMRTPKRCYHQ 169
           A WWYLP RT KR YH+
Sbjct: 569 AEWWYLPARTHKRSYHR 585


>UniRef50_A3LSL7 Cluster: Agglutinin-like protein 2; n=1; Pichia
           stipitis|Rep: Agglutinin-like protein 2 - Pichia
           stipitis (Yeast)
          Length = 1452

 Score = 31.5 bits (68), Expect = 7.2
 Identities = 26/95 (27%), Positives = 37/95 (38%), Gaps = 1/95 (1%)
 Frame = -3

Query: 385 TSSQSTWC*VFTGTHRHLQRKCATHLEI*VLRSQYSYNGYSTLRTETHYCFTAEIGGVVV 206
           T+  STW   FT T  +   +  T   + V+ ++YS    ST    T    + E      
Sbjct: 346 TTVTSTWTGTFTTTETYTDTQGGTDTIVIVVPTEYSSTEESTTEEPTTEESSTEESTTEE 405

Query: 205 PTHADSQ-EVLPPVINYANYNFAGLIFITRCYSFT 104
           PT  +S  EVLP         + G    T  Y+ T
Sbjct: 406 PTTEESSTEVLPNETTTITSTWTGTFTTTETYTDT 440



 Score = 31.5 bits (68), Expect = 7.2
 Identities = 26/95 (27%), Positives = 37/95 (38%), Gaps = 1/95 (1%)
 Frame = -3

Query: 385 TSSQSTWC*VFTGTHRHLQRKCATHLEI*VLRSQYSYNGYSTLRTETHYCFTAEIGGVVV 206
           T+  STW   FT T  +   +  T   + V+ ++YS    ST    T    + E      
Sbjct: 481 TTITSTWTGTFTTTETYTDTQGGTDTIVIVVPTEYSSTEESTTEEPTTEESSTEESTTEE 540

Query: 205 PTHADSQ-EVLPPVINYANYNFAGLIFITRCYSFT 104
           PT  +S  EVLP         + G    T  Y+ T
Sbjct: 541 PTTEESSTEVLPNETTTITSTWTGTFTTTETYTDT 575



 Score = 31.5 bits (68), Expect = 7.2
 Identities = 26/95 (27%), Positives = 37/95 (38%), Gaps = 1/95 (1%)
 Frame = -3

Query: 385 TSSQSTWC*VFTGTHRHLQRKCATHLEI*VLRSQYSYNGYSTLRTETHYCFTAEIGGVVV 206
           T+  STW   FT T  +   +  T   + V+ ++YS    ST    T    + E      
Sbjct: 556 TTITSTWTGTFTTTETYTDTQGGTDTIVIVVPTEYSSTEESTTEEPTTEESSTEESTTEE 615

Query: 205 PTHADSQ-EVLPPVINYANYNFAGLIFITRCYSFT 104
           PT  +S  EVLP         + G    T  Y+ T
Sbjct: 616 PTTEESSTEVLPNETTTITSTWTGTFTTTETYTDT 650


>UniRef50_A5GWB8 Cluster: Uncharacterized conserved membrane
           protein; n=1; Synechococcus sp. RCC307|Rep:
           Uncharacterized conserved membrane protein -
           Synechococcus sp. (strain RCC307)
          Length = 518

 Score = 31.1 bits (67), Expect = 9.6
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -1

Query: 219 AGWWYLPMRTPKRCYHQ*LITP 154
           AGWW+L  ++P +  HQ L TP
Sbjct: 25  AGWWWLQSQSPLKLQHQSLTTP 46


>UniRef50_A3PS70 Cluster: YD repeat protein; n=2; Rhodobacter
           sphaeroides|Rep: YD repeat protein - Rhodobacter
           sphaeroides (strain ATCC 17029 / ATH 2.4.9)
          Length = 1687

 Score = 31.1 bits (67), Expect = 9.6
 Identities = 22/79 (27%), Positives = 37/79 (46%), Gaps = 3/79 (3%)
 Frame = -3

Query: 298 VLRSQYSYNGYSTLRTETHYCFTAEIGGVV---VPTHADSQEVLPPVINYANYNFAGLIF 128
           V R   +Y+G+  + TETH+  T   G VV   V T   + +  P V+++        + 
Sbjct: 757 VQRVTSAYDGFGQVVTETHFSITG--GNVVQNSVKTFTYTPDGNPEVVDFTGTPATAALQ 814

Query: 127 ITRCYSFTVEVNREHLLST 71
            TRC +   ++N   +L T
Sbjct: 815 ATRCTTTQRDLNGNPILVT 833


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 457,181,702
Number of Sequences: 1657284
Number of extensions: 8790684
Number of successful extensions: 18388
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 18004
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18374
length of database: 575,637,011
effective HSP length: 92
effective length of database: 423,166,883
effective search space used: 19465676618
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)