Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0546
         (417 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho...    27   1.2  
SPBC1718.04 |||glycerol-3-phosphate O-acyltransferase |Schizosac...    25   3.6  
SPBC83.19c |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    24   8.2  

>SPBC3E7.01 |fab1|ste12,
            SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
            Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1932

 Score = 27.1 bits (57), Expect = 1.2
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +2

Query: 23   TGVRIPQAGTNFSNEIRTQQMFP 91
            T   IP+A  +F+N+I TQ  FP
Sbjct: 1302 TSSDIPKANIDFTNDISTQNTFP 1324


>SPBC1718.04 |||glycerol-3-phosphate O-acyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 675

 Score = 25.4 bits (53), Expect = 3.6
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +2

Query: 206 YHHPAYFRREAVMRFGS 256
           Y HP  FR  AV+ FGS
Sbjct: 249 YFHPHRFRSRAVLEFGS 265


>SPBC83.19c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 119

 Score = 24.2 bits (50), Expect = 8.2
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = -1

Query: 201 PMRTPKRCYHQ*LITPIIILRV*FLLQDVIPSPWKSIG 88
           P R  ++C ++ +  P +ILR   +  DV P+ + +IG
Sbjct: 79  PYRGYRKCIYRKVKMPNLILRNPLVRYDVSPARYPTIG 116


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,865,984
Number of Sequences: 5004
Number of extensions: 36567
Number of successful extensions: 71
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 146319408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)